Odsek za biokemijo, molekularno in strukturno biologijo (B1)

ČLANKI IN DRUGI SESTAVNI DELI

1.01 Izvirni znanstveni članek

2. Dejan Caglič, Jerica Rozman Pungerčar, Gunnar Pejler, Vito Turk, Boris Turk, "Glycosaminoglycans facilitate procathepsin B activation through disruption of propeptide-mature enzyme interactions", J. biol. chem., vol. 282, str. 33076-33084, [in press] 2007. [COBISS.SI-ID 20971303]

3. Iztok Dolenc, Roger H. Pain, Vito Turk, "Presence of the propeptide on recombinant lysosomal dipeptidase controls both activation and dimerization", Biol. chem. (Print), vol. 388, str. 47-51, 2007. [COBISS.SI-ID 20793895]

4. Marko Fonović, Matthew Bogyo, "Activity based probes for proteases : applications to biomarker discovery, molecular imaging and drug screening", Curr. pharm. des., vol. 13, no. 3, str. 253-261, 2007. [COBISS.SI-ID 20499751]

5. Marko Fonović, Steven H. L. Verhelst, M. T. Sorum, Matthew Bogyo, "Proteomics evaluation of chemically cleavable activity-based probes", Molecular & cellular proteomics, vol. 6, no. 10, str. 1761-1770, 2007. [COBISS.SI-ID 21102631]

6. Jade K. Forwood, Anil S. Thakur, Gregor Gunčar, Mary Marfori, Dmitri Mouradov, Weining Meng, Jodie Robinson, Thomas Huber, Stuart Kellie, Jennifer L. Martin, David A. Hume, Boštjan Kobe, "Structural basis for recruitment of tandem hotdog domains in acyl-CoA thioesterase 7 and its role in inflammation", Proc. Natl. Acad. Sci. U. S. A., vol. 104, no. 25, str. 10382-10387, 2007. [COBISS.SI-ID 3712794]

7. Uroš Gregorc, Saška Ivanova, Miranda Thomas, Ernesto Guccione, Britt Glaunsinger, Ron Javier, Vito Turk, Lawrence Banks, Boris Turk, "Cleavage of MAGI-1, a tight junction PDZ protein, by caspases is an important step for cell-cell detachment in apoptosis", Apoptosis, vol. 12, no. 2, str. 343-354, 2007. [COBISS.SI-ID 20500519]

8. Gregor Gunčar, Ching-I. A. Wang, Jade K. Forwood, Trazel Teh, Ann-Maree Catanzariti, Jeffrey G. Ellis, Peter N. Dodds, Boštjan Kobe, "The use of Co[sup](2+) crystallization and structure determination, using a conventional monochromatic x-ray source, of flax rust avirulence protein", Acta crystallographica. Section F, Structural biology and crystallization communications, vol. 63, str. 209-213, 2007. [COBISS.SI-ID 20625447]

9. Saška Ivanova, Urška Repnik, Lawrence Banks, Vito Turk, Boris Turk, "Cellular localization of MAGI-1 caspase cleavage products and their role in apoptosis", Biol. chem. (Print), vol. 388, str. 1195-1198, 2007. [COBISS.SI-ID 21173799]

10. Saša Jenko, Gregor Gunčar, Igor Štern, Gareth J. Morgan, Sabina Rabzelj, Manca Kenig, Rosemary A. Staniforth, Jonathan P. Waltho, Eva Žerovnik, Dušan Turk, "Essential role of proline isomerization in stefin B tetramer formation", J. Mol. Biol., vol. 366, str. 1569-1579, 2007. [COBISS.SI-ID 20673831]

11. Nataša Kopitar-Jerala, Boris Turk, "Cleavage of the myristoylated alanine-rich C kinase substrate (MARCKS) by cysteine cathepsins in cells and tissues of stefin B-deficient mice", Biol. chem. (Print), vol. 388, str. 847-852, 2007. [COBISS.SI-ID 20945191]

12. Marko Mihelič, Dušan Turk, "Two decades of thyroglobulin type-1 domain research", Biol. chem. (Print), vol. 388, str. 1123-1130, 2007. [COBISS.SI-ID 20973607]

13. Adaleta Mulaomerović, Alma Halibašić, Elmir Čičkušić, Tina Zavašnik-Bergant, Lejla Begić, Janko Kos, "Cystatin C as a potential marker for relapse in patients with non-Hodgkin B-cell lymphoma", Cancer lett., vol. 248, no. 2, str. 192-197, 2007. [COBISS.SI-ID 1974385]

14. Marko Novinec, Robert N. Grass, Wendelin J. Stark, Vito Turk, Antonio Baici, Brigita Lenarčič, "Interaction between human cathepsins K, L, and S, Mechanism of elastinolysis and ihibition by macromolecular inhibitors", J. biol. chem., vol. 282, no. 11, str. 7893-78902, 2007. [COBISS.SI-ID 20683559]

15. Poh Chee Ong, Boris Turk, (12 avtorjev), "DNA accelerates the inhibition of human cathepsin V by serpins", J. biol. chem., vol. 272, no. 51, str. 36980-36986, 2007. [COBISS.SI-ID 21274919]

16. Ivan Plantan, Lovro Selič, Tomaž Mesar, Petra Štefanič, Marko Oblak, Andrej Preželj, Lars Hesse, Miha Andrejašič, Mateja Vilar, Dušan Turk, Andrej Kocijan, Tadeja Prevec, Gregor Vilfan, Darko Kocjan, Anton Čopar, Uroš Urleb, Tomaž Šolmajer, "4-substituted trinems as broad spectrum [beta]-lactamase inhibitors", J. med. chem., vol. 50, no. 17, str. 4113-4121, 2007. [COBISS.SI-ID 3759642]

17. Mihaela Ploscaru, Saša Jenko, Marko Uplaznik, Damjan Vengust, Dušan Turk, Aleš Mrzel, Dragan Mihailović, "Mo[sub]6S[sub](9-x)I[sub]x nanowire recognitive molecular-scale connectivity", Nano lett. (Print), vol. 7, no. 6, str. 1445-1448, 2007. [COBISS.SI-ID 20810279]

18. K. B. Sexton, D. Kato, A. B. Berger, Marko Fonović, Steven H. L. Verhelst, Matthew Bogyo, "Specificity of aza-peptide electrophile activity-based probes of caspases", Cell Death Differ, vol. 14, str. 727-732, 2007. [COBISS.SI-ID 20961575]

19. Daniel Spira, Olga Vasiljeva, (11 avtorjev), "Cell type-specific functions of the lysosomal protease cathepsin L in the heart", J. biol. chem., vol. 282, no. 51, str. 37045-37052, 2007. [COBISS.SI-ID 21327399]

20. Veronika Stoka, Vito Turk, Dale E. Bredesen, "Differential regulation of Smac/DIABLO", Neuromol. med., vol. 9, no. 3, str. 255-263, 2007. [COBISS.SI-ID 21127207]

21. Veronika Stoka, Vito Turk, Boris Turk, "Lysosomal cysteine cathepsins : signaling pathways in apoptosis : minireview", Biol. chem. (Print), vol. 388, str. 555-560, 2007. [COBISS.SI-ID 20789799]

22. Zoran Štefanić, Dušica Vujaklija, Luka Andrišić, Goran Mikleušević, Miha Andrejašič, Dušan Turk, Marija Luić, "Preliminary crystallographic study of Streptomyces coelicolor single-stranded DNA-binding protein", Croat. chem. acta, vol. 80, no. 1, str. 35-39, 2007. [COBISS.SI-ID 20764455]

23. Thomas Charles Terwilliger, Dušan Turk, (9 avtorjev), "Interpetation of ensembles created by multiple iterative rebuilding of macromolecular models", Acta crystallogr., D Biol. crystallogr., vol. 63, str. 597-610, 2007. [COBISS.SI-ID 20973351]

24. Boris Turk, Veronika Stoka, "Protease signalling in cell death : caspases versus cysteine cathepsins", FEBS lett., vol. 581, str. 2761-2767, 2007. [COBISS.SI-ID 20782119]

25. Olga Vasiljeva, Thomas Reinheckel, Christoph Peters, Dušan Turk, Vito Turk, Boris Turk, "Emerging roles of cysteine cathepsins in disease and their potential as drug targets", Curr. pharm. des., vol. 13, no. 3, str. 385-401, 2007. [COBISS.SI-ID 20500007]

26. Steven H. L. Verhelst, Marko Fonović, Matthew Bogyo, "A mild chemically cleavable linker system for funtional proteomic applications", Angew. Chem. (Int. ed., Print), vol. 46, str. 1284-1286, 2007. [COBISS.SI-ID 20961831]

27. Ching-I. A. Wang, Gregor Gunčar, Jade K. Forwood, Trazel Teh, Ann-Maree Catanzariti, Gregory J. Lawrence, Fionna E. Loughlin, Joel P. Mackay, Horst Joachim Schirra, Peter A. Anderson, Jeffrey G. Ellis, Peter N. Dodds, Boštjan Kobe, "Crystal structures of flax rust avirulence proteins AvrL567-A and -D reveal details of the structural basis for flax disease resistance specificity", Plant cell, vol. 19, no. 9, str. 2898-2912, 2007. [COBISS.SI-ID 3814170]

28. Tina Zavašnik-Bergant, Boris Turk, "Cysteine proteases: destruction ability versus immunomodulation capacity in immune cells", Biol. chem. (Print), vol. 388, no. 11, str. 1141-1149, 2007. [COBISS.SI-ID 20965415]

29. Eva Žerovnik, Miha Škarabot, Katja Škerget, Silva Giannini, Veronika Stoka, Saša Jenko, Rosemary A. Staniforth, "Amyloid fibril formation by human stefin B : influence of pH and TFE on fibril growth and morphology", Amyloid (Carnforth), vol. 14, no. 3, str. 237-247, 2007. [COBISS.SI-ID 21005095]

1.04 Strokovni članek

1.05 Poljudni članek

2. Vito Turk, "Karol Kajfež, 1917-2007", Delo (Ljubl.), leto 49, št. 199, str. 20, 30. avg. 2007. [COBISS.SI-ID 235362048]

1.06 Objavljeni znanstveni prispevek na konferenci (vabljeno predavanje)

1.08 Objavljeni znanstveni prispevek na konferenci

2. Željko Pogačnik, Miha Andrejašič, Igor Štern, Mateja Galež, Simona Murko, "Baghouse fines of coralline limestone or fossil coral with calcium carbonate : results of preliminar research", V: Mednarodna konferenca "Gospodarjenje z odpadki, okoljska geotehnologija in trajnostni razvoj" : ICWMEGGSD'07 - GzO'07, Avgust 28.-30.,2007, Ljubljana, Slovenija, Ljubljana, Naravoslovnotehniška fakulteta, Oddelek za geotehnologijo in rudarstvo, 2007, 11 str. [COBISS.SI-ID 20984871]

1.12 Objavljeni povzetek znanstvenega prispevka na konferenci

2. Miha Andrejašič, Dušan Turk, "Database and server of geometric restraints of hetero compounds", V: Program and abstract book, Buffalo, American Crystallographic Association, 2007, str. 37. [COBISS.SI-ID 20984103]

3. Shirin Arastu-Kapur, Elizabeth L. Ponder, Urša Pečar Fonović, Sharon Yeoh, Munira Garinger, Yuan Fang, Mark E. Drew, Marko Fonović, Carolyn Ines Phillips, James Powers, Michael Klemba, Michael Blackman, Matthew Bogyo, "Host cell rupture by Plasmodium falcip[a]rum is mediated by a cascade of two distinct proteolytic pathways", V: Pacific coast protease workshop : Palm Canyon Resort Borrego Springs, California, April 27 - April 30, 2007, [S. l., s. n.], 2007, str. 28. [COBISS.SI-ID 2408552]

4. Shirin Arastu-Kapur, Elizabeth L. Ponder, Urša Pečar Fonović, Sharon Yeoh, Munira Garinger, Fang Yuan, Mark E. Drew, Marko Fonović, Carolyn Philips, James Powers, Michael Klemba, Michael Blackman, Matthew Bogyo, "Small molecule screening indentifies proteolytic pathways used by Plasmodium falciprum to mediate erythrocyte rupture", V: Book of abstract, 5th General Meeting of the International Proteolysis Society, Patras, Greece, 20-24 October 2007, Georgia Sotiropoulou, ur., Georgios Pampalakis, ur., Maria Arampatzidou, ur., [S. l.], International Proteolysis Society, 2007, str. 71. [COBISS.SI-ID 2204529]

5. Galia Blum, Alicia Berger, Carolyn Ines Phillips, Shirin Arastu-Kapur, Marko Fonović, Urša Pečar Fonović, Matthew Bogyo, "New tools and methods for functional proteomic profiling of proteases", V: Book of abstract, 5th General Meeting of the International Proteolysis Society, Patras, Greece, 20-24 October 2007, Georgia Sotiropoulou, ur., Georgios Pampalakis, ur., Maria Arampatzidou, ur., [S. l.], International Proteolysis Society, 2007, str. 137. [COBISS.SI-ID 2204785]

6. Lea Bojič, Gregor Kosec, Zlatko Bojanović, Vito Turk, Boris Turk, "Proteomics approach towards identification of cysteine cathepsin substrates following lysosomal destabilizationf", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 72. [COBISS.SI-ID 20853287]

7. Lea Bojič, Ana Petelin, Gabriela Droga-Mazovec, David Huang, Thomas Reinheckel, Christoph Peters, Veronika Stoka, Vito Turk, Boris Turk, "Apoptosis induced by selective lysosome membrane permeabilization proceeds through mitochondrial destabilization and its largely dependent on cathepsins B and L", V: Programme & book of abstracts, 15th ECDO Euroconference on Apoptosis [and 4th Training Course on Conpects and Methods in Programmed Cell Death], October 26-31, 2007, Portoroz, Slovenia, [S. l.], ECDO, 2007. [COBISS.SI-ID 21236519]

8. Maruška Budič, Maja Šoštarič, Blaž Cigić, Vladimir Meglič, Marjetka Kidrič, "Serine proteases involved in the response to water stress in common bean (Phaseolus vulgaris L.)", V: Zbornik povzetkov, 7. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, 26.-29. september 2007 = 7th Meeting of the Slovenian Biochemical Society with International Participation, Maribor, September 26th to 29th, 2007, Nataša Poklar Ulrih, ur., Veronika Abram, ur., Blaž Cigić, ur., Ljubljana, Slovensko biokemijsko društvo, = Slovenian Biochemical Society, 2007, str. 70. [COBISS.SI-ID 21158439]

9. Dejan Caglič, Jerica Rozman Pungerčar, Urška Požgan, Christopher Jedeszko, Mary B. Goldring, Bonnie F. Sloane, Boris Turk, "Do proinflammatory cytokines promote active secretion of cysteine cathepsins in human chondrocytes?", V: 24th Winter School Proteinases and their Inhibitors : in Tiers at the Rosengarten, Febr. 28th - March 4th, 2007, [S.l., s.n.], 2007, str. 15. [COBISS.SI-ID 20616487]

10. Dejan Caglič, Jerica Rozman Pungerčar, Urška Požgan, Christopher Jedeszko, Mary B. Goldring, Bonnie F. Sloane, Boris Turk, "Do proinflammatory cytokines promote active secretion of cysteine cathepsins in human chondrocytes?", V: Book of abstract, 5th General Meeting of the International Proteolysis Society, Patras, Greece, 20-24 October 2007, Georgia Sotiropoulou, ur., Georgios Pampalakis, ur., Maria Arampatzidou, ur., [S. l.], International Proteolysis Society, 2007, str. 182. [COBISS.SI-ID 21230887]

11. Dejan Caglič, Jerica Rozman Pungerčar, Urška Požgan, Christopher Jedeszko, Mary B. Goldring, Bonnie F. Sloane, Boris Turk, "Do proinflammatory cytokines promote active secretion of cysteine cathepsins in human chondrocytes?", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 102. [COBISS.SI-ID 20910631]

12. Slavko Čeru, Saša Jenko, Miha Škarabot, Nataša Kopitar-Jerala, Dušan Turk, Vito Turk, Eva Žerovnik, "Toxicity, size and morphology of prefibrillar oligomers : applied from the outside or expressed inside cells", V: Book of abstracts, Sinapsa Neuroscience Symposium '07, 5th-7th October 2007, Ljubljana, Blaž Koritnik, ur., Damjan Osredkar, ur., Ljubljana, Sinapsa, Slovenian Neuroscience Association, 2007, str. 29. [COBISS.SI-ID 21123623]

13. Slavko Čeru, Saša Jenko, Miha Škarabot, Nataša Kopitar-Jerala, Dušan Turk, Vito Turk, Eva Žerovnik, "Toxic oligomers of amyloidogenic proteins and aggregation in U2OS cell line : a case study of human stefin B (cystatin B)", V: Zbornik povzetkov, 7. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, 26.-29. september 2007 = 7th Meeting of the Slovenian Biochemical Society with International Participation, Maribor, September 26th to 29th, 2007, Nataša Poklar Ulrih, ur., Veronika Abram, ur., Blaž Cigić, ur., Ljubljana, Slovensko biokemijsko društvo, = Slovenian Biochemical Society, 2007, str. 61. [COBISS.SI-ID 21119527]

14. Iztok Dolenc, Roger H. Pain, Vito Turk, "Presence of the propeptide on recombinant lysosomal dipeptidase controls both activation and dimerization", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 127. [COBISS.SI-ID 20917287]

15. Gabriela Droga-Mazovec, Lea Bojič, Ana Petelin, Rok Romih, Veronika Stoka, Boris Turk, "The antiapoptotic BCL-2 protein as a mediator of lysosomal cysteine protease-induced apoptosis in HeLa and MCF-7 cells : [presented at 43th SAIB Annual Meeting of Argentine Society for Biochemistry and Molecular Biology Research, 17-20 November 2007, Buenos Aires, Argentina]", Biocell (Mendoza), vol. 31, suppl. , 1 str., 2007. [COBISS.SI-ID 21410599]

16. Gabriela Droga-Mazovec, Urška Repnik, Saška Ivanova, Rok Romih, Mauro Degli Esposti, Vito Turk, Boris Turk, "LeuLeuOMe-triggered lysosomal disruption is followed by autophagy in Z-VAD-fmk treated cells", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 115. [COBISS.SI-ID 20916007]

17. Marko Fonović, Urša Pečar Fonović, Joe Dan Dunn, Matthew Bogyo, "Toxoplasma membrane proteins and host cell invasion", V: Pacific coast protease workshop : Palm Canyon Resort Borrego Springs, California, April 27 - April 30, 2007, [S. l., s. n.], 2007, str. 22. [COBISS.SI-ID 2408296]

18. Marko Fonović, Steven H. L. Verhelst, Matthew Bogyo, "Activity based probe with a Diazo cleavable linker - a novel tool in proteomic analysis of cysteine proteaes", V: 55th ASMS Conference on mass spectrometry and allied topics : June 3 - June 7, 2007, Indianapolis, Indiana, Santa Fe, American Society for Mass Spectrometry, 2007, 2 str. [COBISS.SI-ID 20966183]

19. Marko Fonović, Steven H. L. Verhelst, Matthew Bogyo, "Methods for direct quantitative profiling of protease activity in complex protein mixtures", V: Pacific coast protease workshop : April 29 - May 2, 2005, Half Moon Bay Lodge, Half Moon Bay, California, [S. l., s. n.], 2007. [COBISS.SI-ID 21064999]

20. Shin-Rong Hwang, Veronika Stoka, Vito Turk, Vivian Yuan-Wen Ho Hook, "Cellular expression of cathepsin L for peptide neurotransmitter production, and inhibition of cathepsin L by the serpin endopin 2C", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 77. [COBISS.SI-ID 20856103]

21. Saška Ivanova, Uroš Gregorc, Lawrence Banks, David S. Bredt, Ron Javier, Rok Romih, Peter Vandenabeele, Vito Turk, Boris Turk, "Scaffolding proteins at cell junctions, the MAGUKs, as substrates for proteases during apoptosis", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 118. [COBISS.SI-ID 20916519]

22. Saška Ivanova, Uroš Gregorc, Urška Repnik, Lawrence Banks, David S. Bredt, Ron Javier, Rok Romih, Peter Vandenabeele, Vito Turk, Boris Turk, "MAGUKs, scaffolding proteins at cell junctions, as substrates for the caspases and cathepsins during apoptosis", V: 24th Winter School Proteinases and their Inhibitors : in Tiers at the Rosengarten, Febr. 28th - March 4th, 2007, [S.l., s.n.], 2007, str. 32. [COBISS.SI-ID 20616999]

23. Saška Ivanova, Uroš Gregorc, Urška Repnik, Lawrence Banks, Vito Turk, Boris Turk, "Cellular localization of MAGI-1 caspase cleavage products and their role in apoptosis", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 117. [COBISS.SI-ID 20916263]

24. Saška Ivanova, Uroš Gregorc, Urška Repnik, Lawrence Banks, Vito Turk, Boris Turk, "Cellular localization of MAGI-1 caspase cleavage products and their role in apoptosis", V: Programme & book of abstracts, 15th ECDO Euroconference on Apoptosis [and 4th Training Course on Conpects and Methods in Programmed Cell Death], October 26-31, 2007, Portoroz, Slovenia, [S. l.], ECDO, 2007. [COBISS.SI-ID 21236775]

25. Saša Jenko, Igor Štern, Andreja Doberšek, Magda Tušek-Žnidarič, Maruša Pompe Novak, Eva Žerovnik, Vito Turk, Dušan Turk, "Fibrillation of stefin B : stepwise progress towards the assembly into amyloid fibrils", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 26. [COBISS.SI-ID 20852775]

26. Saša Jenko, Igor Štern, Andreja Doberšek, Magda Tušek-Žnidarič, Maruša Pompe Novak, Eva Žerovnik, Vito Turk, Dušan Turk, "Stefin B fibrillation: how many intermediates are there between its native structure and the mature fibrillar form?", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 84. [COBISS.SI-ID 20909607]

27. Špela Konjar, Urška Repnik, Joseph Trapani, Vito Turk, Boris Turk, Nataša Kopitar-Jerala, "Potential role of cathepsins in the life cycle of perforin in YT NK cells", V: ENII - MUGEN, [S. l., s. n.], 2007, str. 318. [COBISS.SI-ID 20940839]

28. Špela Konjar, Urška Repnik, Joseph Trapani, Vito Turk, Boris Turk, Nataša Kopitar-Jerala, "Potential role of cathepsins in the life cycle of perforin in YT NK cells", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 74. [COBISS.SI-ID 20854055]

29. Špela Konjar, Urška Repnik, Joseph Trapani, Vito Turk, Boris Turk, Nataša Kopitar-Jerala, "Cathepsins in the life cycle of perforin in NK cells", V: Programme & book of abstracts, 15th ECDO Euroconference on Apoptosis [and 4th Training Course on Conpects and Methods in Programmed Cell Death], October 26-31, 2007, Portoroz, Slovenia, [S. l.], ECDO, 2007. [COBISS.SI-ID 21237031]

30. Nataša Kopitar-Jerala, "Lysosomal enzymes and their inhibitors in autophagy", V: Book of abstracts, Sinapsa Neuroscience Symposium '07, 5th-7th October 2007, Ljubljana, Blaž Koritnik, ur., Damjan Osredkar, ur., Ljubljana, Sinapsa, Slovenian Neuroscience Association, 2007, str. 34. [COBISS.SI-ID 23395289]

31. Nataša Kopitar-Jerala, Špela Konjar, Matthew Bogyo, Boris Turk, Vito Turk, "Lysosomal cysteine proteinases and their inhibitors in endotoxin tolerance", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 73. [COBISS.SI-ID 20853799]

32. Nataša Kopitar-Jerala, Špela Konjar, Matthew Bogyo, Boris Turk, Vito Turk, "Lysosomal cathepsins and intracellular inhibitors upon activation of macrophages and induction of endotoxin tolerance", V: IMMUNO RIO2007, 13th International Congress of Immunology, Rio de Janeiro, Brazil, August 21-25,2007, [S. l., s. n.], 2007, str. 54. [COBISS.SI-ID 21016871]

33. Nataša Kopitar-Jerala, Špela Konjar, Matthew Bogyo, Boris Turk, Vito Turk, "Lysosomal cathepsins and intracellular inhibitors in endotoxin tolerance", V: Zbornik povzetkov, 7. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, 26.-29. september 2007 = 7th Meeting of the Slovenian Biochemical Society with International Participation, Maribor, September 26th to 29th, 2007, Nataša Poklar Ulrih, ur., Veronika Abram, ur., Blaž Cigić, ur., Ljubljana, Slovensko biokemijsko društvo, = Slovenian Biochemical Society, 2007, str. 36. [COBISS.SI-ID 23217369]

34. Janko Kos, Nataša Obermajer, Zala Jevnikar, Urška Repnik, Boris Turk, Marko Kreft, "Cathepsin X/[beta]-2 integrin dependent functions of immune cells", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 21. [COBISS.SI-ID 20852519]

35. Aida Kriještorac, Selma Berbić, Eva Žerovnik, "Differences in stability and amyloid fibril formation rate of wild-type human stefin B and its site-specific mutant P74S", V: Book of abstracts, Sinapsa Neuroscience Symposium '07, 5th-7th October 2007, Ljubljana, Blaž Koritnik, ur., Damjan Osredkar, ur., Ljubljana, Sinapsa, Slovenian Neuroscience Association, 2007, str. 95. [COBISS.SI-ID 21124135]

36. Tomaž Langerholc, Boris Turk, Janko Kos, "Glycosylation affects functionality of cystatin F", V: 24th Winter School Proteinases and their Inhibitors : in Tiers at the Rosengarten, Febr. 28th - March 4th, 2007, [S.l., s.n.], 2007, str. 36. [COBISS.SI-ID 20617255]

37. Tomaž Langerholc, Boris Turk, Janko Kos, "Glycosylation affects functionality of cystatin F", V: ENII - MUGEN, [S. l., s. n.], 2007, str. 325. [COBISS.SI-ID 20941095]

38. Tomaž Langerholc, Boris Turk, Janko Kos, "Glycosylation affects functionality of cystatin F", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 86. [COBISS.SI-ID 20909863]

39. Marko Mihelič, Andreja Doberšek, Gregor Gunčar, Dušan Turk, "Inhibitory fragment of p41 form of invariant chain regulates activity of a group of cysteine cathepsins", V: Innate immunity and novel vaccines : program and short report : proceedings of the 2007 Miami Winter Symposium, January 27-31, 2007, Miami Beach, Florida, USA, (Miami winter symposium short reports, vol. 18, 2007), [S. l., s. n.], 2007, str. 58. [COBISS.SI-ID 20687655]

40. Marko Mihelič, Cory Teuscher, Vito Turk, Dušan Turk, "Mouse stefins A1 and A2 (Stfa1 and Stfa2) differentiate between papain-like endo- and exopeptidases", V: 24th Winter School Proteinases and their Inhibitors : in Tiers at the Rosengarten, Febr. 28th - March 4th, 2007, [S.l., s.n.], 2007, str. 39. [COBISS.SI-ID 20617511]

41. Marko Mihelič, Cory Teuscher, Vito Turk, Dušan Turk, "Mouse stefins A1 and A2 (Stfa1 and Stfa2) differentiate between papain-like endo- and exopeptidates", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 82. [COBISS.SI-ID 20909351]

42. Maja Mrak, Ana Petelin, Maja Remškar, Boris Turk, "Citotoksičnost nanodelcev na A549 pljučnih celicah", V: Izzivi javnega zdravja v tretjem tisočletju : knjiga izvlečkov, 4. slovenski kongres preventivne medicine, Portorož, 17. do 19. maj 2007, Alenka Kraigher, ur., Ljubljana, Sekcija za preventivno medicino Slovenskega zdravniškega društva, 2007, str. 295. [COBISS.SI-ID 20769063]

43. Marko Novinec, Primož Meh, Miha Pavšič, Vito Turk, Antonio Baici, Brigita Lenarčič, "Inhibitory properties of human thyropins", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 88. [COBISS.SI-ID 20910119]

44. Nataša Obermajer, Petra Kocbek, Urška Repnik, Mateja Cegnar, Bojan Doljak, Julijana Kristl, Janko Kos, "Targeted delivery of cysteine protease inhibitors to tumour cells by anti-cytokeratin coated PLGA nanoparticlesf", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 107. [COBISS.SI-ID 20915751]

45. Sihem Ouasti, Saška Ivanova, Ana Paula Morales, Mauro Degli Esposti, "Fas signalling outside cells : traffic of membranes and proteases my contribute to amplify physiological cell death of T cells", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 44. [COBISS.SI-ID 20853031]

46. Miha Pavšič, Vito Turk, Brigita Lenarčič, "Testican-2 as substrate of cysteine peptidases and potential biological targetof the C1q subcomponent of complement 1", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 89. [COBISS.SI-ID 20910375]

47. Ana Petelin, Lea Bojič, Gabriela Droga-Mazovec, David Huang, Thomas Reinheckel, Christoph Peters, Veronika Stoka, Vito Turk, Boris Turk, "Apoptosis induced by selective lysosome membrane permeabilization proceeds through mitochondrial destabilization and its largely dependent on cathepsins B and L", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 120. [COBISS.SI-ID 20917031]

48. Ana Petelin, Lea Bojič, Gabriela Droga-Mazovec, Saška Ivanova, Rok Romih, Urška Repnik, Guy S. Salvesen, Veronika Stoka, Vito Turk, Boris Turk, "Cysteine cathepsins trigger caspase-dependent cell death through cleavage of Bid and antiapoptotic Bci-2 homologues", V: Programme & book of abstracts, 15th ECDO Euroconference on Apoptosis [and 4th Training Course on Conpects and Methods in Programmed Cell Death], October 26-31, 2007, Portoroz, Slovenia, [S. l.], ECDO, 2007. [COBISS.SI-ID 21237543]

49. Christoph Peters, Olga Vasiljeva, Uta Schurigt, Lisa Sevenich, Marlene Tacke, Tobias Lohmüller, Sascha Hagenmann, Daniel Spira, Thomas Reinheckel, "Emerging roles of cysteine cathepsins in health and disease", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 49. [COBISS.SI-ID 21327143]

50. Carolyn Ines Phillips, Justine Pompey, Urša Pečar Fonović, Jeralyn Haraldsen, Marko Fonović, Margot Paulick, Gary Ward, Matthew Bogyo, "Forward chemical genetic screens identify inhibitors of discrete progress involved in invasion and egress of the protozoan parasites, Toxoplasma gondii", V: Pacific coast protease workshop : Palm Canyon Resort Borrego Springs, California, April 27 - April 30, 2007, [S. l., s. n.], 2007, str. 6. [COBISS.SI-ID 2407784]

51. Mihaela Ploscaru, Saša Jenko, Marko Uplaznik, Damjan Vengust, Dušan Turk, Aleš Mrzel, Dragan Mihailović, "MoSIx nanowires functionalization for molecular-scale connectivity", V: SLONANO 2007 : 10-12 October, Jožef Stefan Institute, Ljubljana, Slovenia : programme & abstracts, Ljubljana, Jožef Stefan Institute, 2007. [COBISS.SI-ID 21252903]

52. Elizabeth L. Ponder, Marko Fonović, Nagamelleswari Kolli, Puran Sijwali, Keith Wilkinson, Susan Demo, Matthew Bogyo, "Characterization of the ubiquitin and ubiquitin-like modification pathways of Plasmodium falciparum", V: Book of abstract, 5th General Meeting of the International Proteolysis Society, Patras, Greece, 20-24 October 2007, Georgia Sotiropoulou, ur., Georgios Pampalakis, ur., Maria Arampatzidou, ur., [S. l.], International Proteolysis Society, 2007, str. 415. [COBISS.SI-ID 21200423]

53. Urška Požgan, Aleš Premzl, Jerica Rozman Pungerčar, Dejan Caglič, Urška Repnik, Blaž Rozman, Boris Turk, "Expression levels and potential involvement of cathepsins in arthritis", V: 24th Winter School Proteinases and their Inhibitors : in Tiers at the Rosengarten, Febr. 28th - March 4th, 2007, [S.l., s.n.], 2007, str. 43. [COBISS.SI-ID 20617767]

54. Urška Požgan, Aleš Premzl, Jerica Rozman Pungerčar, Dejan Caglič, Urška Repnik, Blaž Rozman, Boris Turk, "Biochemical characterization of synovial fluid from patients with different types of arthritis", V: Zbornik povzetkov, 7. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, 26.-29. september 2007 = 7th Meeting of the Slovenian Biochemical Society with International Participation, Maribor, September 26th to 29th, 2007, Nataša Poklar Ulrih, ur., Veronika Abram, ur., Blaž Cigić, ur., Ljubljana, Slovensko biokemijsko društvo, = Slovenian Biochemical Society, 2007, str. 126. [COBISS.SI-ID 23228377]

55. Urška Požgan, Aleš Premzl, Jerica Rozman Pungerčar, Dejan Caglič, Urška Repnik, Blaž Rozman, Vito Turk, Boris Turk, "Biochemical characterization of synovial fluid from arthritic patients", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 103. [COBISS.SI-ID 20910887]

56. Jure Pražnikar, Pavel Afonine, Dušan Turk, "Validation of "Kick maps" : [presented at 24rd European Crystallographic Meeting, ECM24, Marrakech, 2007]", Acta crystallogr., A Found. crystallogr., vol. 63, str. s164, 2007. [COBISS.SI-ID 21508647]

57. Aleš Premzl, Urška Požgan, Boris Turk, "Cysteine proteases and their importance in the progression of cancer and inflammatory diseases", V: Abstract book, 1st practical EMBO course in "Mass spectrometry and proteomics", Odense, April 2007, [S. l.], University of Southern Denmark, 2007. [COBISS.SI-ID 20886823]

58. Thomas Reinheckel, Olga Vasiljeva, Tobias Lohmüller, Julia Dennemärker, Uta Schurigt, Lisa Sevenich, Achim Krüger, Matthew Bogyo, Christoph Peters, "Cathepin inhibition for cancer therapy? : lessons from mouse models", V: Book of abstract, 5th General Meeting of the International Proteolysis Society, Patras, Greece, 20-24 October 2007, Georgia Sotiropoulou, ur., Georgios Pampalakis, ur., Maria Arampatzidou, ur., [S. l.], International Proteolysis Society, 2007, str. 67. [COBISS.SI-ID 21327655]

59. Miha Renko, Saša Jenko, Linda Wildling, Peter Hinterdorfer, Dušan Turk, "Single molecule force spectroscopy of cathepsin L - stefin A interaction", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 80. [COBISS.SI-ID 20856359]

60. Urška Repnik, Saška Ivanova, Uroš Gregorc, Lawrence Banks, David S. Bredt, Ron Javier, Rok Romih, Peter Vandenabeele, Vito Turk, Boris Turk, "Scaffolding proteins at cell junctions, the MAGUKs, as substrates for proteases during apoptosis", V: Programme & book of abstracts, 15th ECDO Euroconference on Apoptosis [and 4th Training Course on Conpects and Methods in Programmed Cell Death], October 26-31, 2007, Portoroz, Slovenia, [S. l.], ECDO, 2007. [COBISS.SI-ID 21237799]

61. Urška Repnik, Amanda E. Starr, Christoper M. Overall, Vito Turk, Boris Turk, "Chemokines as targets for cathepsins : a possible role in rheumatoid arthritis?", V: 24th Winter School Proteinases and their Inhibitors : in Tiers at the Rosengarten, Febr. 28th - March 4th, 2007, [S.l., s.n.], 2007, str. 45. [COBISS.SI-ID 20626983]

62. Urška Repnik, Rihard Trebše, Dejan Caglič, Špela Konjar, Boris Turk, "The role of cysteine cathepsins from synovial-like fibroblasts in arthritic disease", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 104. [COBISS.SI-ID 20911655]

63. Veronika Stoka, Dale E. Bredesen, "Regulation of apoptosis during aging", V: Book of abstracts, Sinapsa Neuroscience Symposium '07, 5th-7th October 2007, Ljubljana, Blaž Koritnik, ur., Damjan Osredkar, ur., Ljubljana, Sinapsa, Slovenian Neuroscience Association, 2007, str. 35. [COBISS.SI-ID 21143079]

64. Dejan Suban, Tajana Zajc, Tina Zavašnik-Bergant, Veronika Stoka, Iztok Dolenc, "Human lysosomal dipeptidase : expression and localization in HEK-293 cells : [presented at 43th SAIB Annual Meeting of Argentine Society for Biochemistry and Molecular Biology Research, 17-20 November 2007, Buenos Aires, Argentina]", Biocell (Mendoza), vol. 31, suppl. , 1 str., 2007. [COBISS.SI-ID 21410343]

65. Dejan Suban, Tajana Zajc, Tina Zavašnik-Bergant, Veronika Stoka, Vito Turk, Iztok Dolenc, "Expression and localization of human lysosomal dipeptidase in HEK-293 cell line involves the lysosomal compartment", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 128. [COBISS.SI-ID 20917543]

66. Katja Škerget, Magda Tušek-Žnidarič, Corina Loeschner, David R. Brown, Eva Žerovnik, "Role of copper in the inhibition of amyloid fibrillation by human stefin B (cystatin B)", V: 24th Winter School Proteinases and their Inhibitors : in Tiers at the Rosengarten, Febr. 28th - March 4th, 2007, [S.l., s.n.], 2007, str. 52. [COBISS.SI-ID 20627239]

67. Katja Škerget, Andrej Vilfan, Saša Jenko, Vito Turk, Dušan Turk, Eva Žerovnik, "Model for stefin B amyloid-fibrillation from the kinetics & size of the toxic oligomers", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 83. [COBISS.SI-ID 20909095]

68. Katja Škerget, Eva Žerovnik, Andrej Vilfan, "The mechanism of amyloid-fibril formation by stefin B : temperature and protein concentration dependence of the rates", V: Book of abstracts, Sinapsa Neuroscience Symposium '07, 5th-7th October 2007, Ljubljana, Blaž Koritnik, ur., Damjan Osredkar, ur., Ljubljana, Sinapsa, Slovenian Neuroscience Association, 2007, str. 28. [COBISS.SI-ID 21123367]

69. Sun Tao, Boris Turk, Vito Turk, Nataša Kopitar-Jerala, "Overexpression of stefin B in the nucleus of T98G astrocytoma cells delays caspase 3 activation in staurosporine-induced apoptosis", V: Programme & book of abstracts, 15th ECDO Euroconference on Apoptosis [and 4th Training Course on Conpects and Methods in Programmed Cell Death], October 26-31, 2007, Portoroz, Slovenia, [S. l.], ECDO, 2007. [COBISS.SI-ID 21237287]

70. Boris Turk, "Lysosomal protease pathways to cell death : critical role of mitochondria", V: Book of abstract, 5th General Meeting of the International Proteolysis Society, Patras, Greece, 20-24 October 2007, Georgia Sotiropoulou, ur., Georgios Pampalakis, ur., Maria Arampatzidou, ur., [S. l.], International Proteolysis Society, 2007, str. 47. [COBISS.SI-ID 21230631]

71. Boris Turk, "Protease signaling : cysteine cathepsins pathways to cell death : [invited talk presented at 32nd FEBS Congress Molecular Machines, 7-12 July 2007, Austria]", FEBS journal, vol. 274, suppl. 1, str. 23, 2007. [COBISS.SI-ID 21049127]

72. Boris Turk, "Lysosomal pathways to cell death: the interplay between caspases and cathepsins : [invited talk]", V: International cell death society presents "Honoring contributions of dr. Richard Lockshin to the field of cell death" : scientific symposium on Programmed cell death, The Rockefeller Univerity, 10 December 2007, New York : program and abstracts book, New York, The Rockefeller University, 2007. [COBISS.SI-ID 21414695]

73. Olga Vasiljeva, Matvey Korovin, Mieczyslaw Gajda, Harald Brodoefel, Lea Bojič, Achim Krüger, Uta Schurigt, Lisa Sevenich, Boris Turk, Christoph Peters, Thomas Reinheckel, "Delayed histopathological progression and reduced tumour cell proliferation of mammary cancer in cathepsin B deficient mice", V: Book of abstract, 5th General Meeting of the International Proteolysis Society, Patras, Greece, 20-24 October 2007, Georgia Sotiropoulou, ur., Georgios Pampalakis, ur., Maria Arampatzidou, ur., [S. l.], International Proteolysis Society, 2007, str. 243. [COBISS.SI-ID 21231399]

74. Olga Vasiljeva, Matvey Korovin, Mieczyslaw Gajda, Harald Brodoefel, Lea Bojič, Boris Turk, Christoph Peters, Thomas Reinheckel, "Cathepsin B promotes histopathological progression and proliferatino of mammary cancer", V: From single molecules to degradomics : book of abstracts, Marko Dolinar, ur., Veronika Stoka, ur., Boris Turk, ur., Ljubljana, Jožef Stefan Institute, 2007, str. 106. [COBISS.SI-ID 20911911]

75. Steven H. L. Verhelst, Marko Fonović, Matthew Bogyo, "A novel and mild chemically cleavable linker system applied to proteomic analysis of protease activity", V: Book of abstract, 5th General Meeting of the International Proteolysis Society, Patras, Greece, 20-24 October 2007, Georgia Sotiropoulou, ur., Georgios Pampalakis, ur., Maria Arampatzidou, ur., [S. l.], International Proteolysis Society, 2007, str. 462. [COBISS.SI-ID 21200679]

76. Gabriella Viero, Sabina Rabzelj, Gregor Anderluh, Mauro Dalla Serra, Eva Žerovnik, "Stefin B WT, E31Y and G4R variant form channels in planar lipid membranes", V: III. Meeting on Molecular Mechanisms of Neurodegeneration : Aula Magna dell'Universita' degli Studi di Milano, May 19-21,2007, Milano, Italy, [S.l., s.n.], 2007. [COBISS.SI-ID 20771623]

77. Tina Zavašnik-Bergant, Martina Bergant, Matjaž Jeras, Gareth Griffiths, "Protease inhibitor cystatin C is differentiation dependent in human dendddritic cells", V: EMBO-FEBS Workshop on endocytic systems: mechanism and function : September 18-23,2007, Villars-sur-Ollon, Switzerland, [S. l., s. n.], 2007, str. 135. [COBISS.SI-ID 21158183]

78. Tina Zavašnik-Bergant, Martina Bergant, Matjaž Jeras, Gareth Griffiths, "Protease inhibitor cystatin C is differentiation dependent in human dendritic cells", V: Focus on Microscopy : FOM 2007 : program and abstract book, [S. l., s. n.], 2007, str. 233. [COBISS.SI-ID 20764967]

79. Eva Žerovnik, "Using stefin B as a model amyloidogenic protein : overview : [invited talk]", V: Book of abstracts, Sinapsa Neuroscience Symposium '07, 5th-7th October 2007, Ljubljana, Blaž Koritnik, ur., Damjan Osredkar, ur., Ljubljana, Sinapsa, Slovenian Neuroscience Association, 2007, str. 27. [COBISS.SI-ID 21123111]

80. Eva Žerovnik, "The mechanism of amyloid-induced toxicity : case study of cystatins : [invited talk]", V: 2nd European conference on chemistry for life sciences : 4-8 September 2007, Wroclaw (Poland) : [book of abstracts], Marek Cebrat, ur., Wroclaw [Poland], University of Wroclaw, Faculty of Chemistry, 2007, str. 90. [COBISS.SI-ID 21073703]

81. Eva Žerovnik, "Cystatin B : [invited talk]", V: Progressive myoclonus epilepsies: focus on Lafora and Unverricht-Lundborg diseases : international workshop, Sarlat, France, May 9-12, 2007, [S. l., s. n.], 2007. [COBISS.SI-ID 20772391]

82. Eva Žerovnik, Slavko Čeru, Katja Škerget, Andrej Vilfan, Saša Jenko, Sabina Rabzelj, Gregor Anderluh, Vito Turk, Dušan Turk, Allan Staniforth, "Model for stefin B amyloid-fibrillation from the kinetics & size the toxic oligomers", V: III. Meeting on Molecular Mechanisms of Neurodegeneration : Aula Magna dell'Universita' degli Studi di Milano, May 19-21,2007, Milano, Italy, [S.l., s.n.], 2007. [COBISS.SI-ID 20771879]

1.13 Objavljeni povzetek strokovnega prispevka na konferenci

2. Katja Škerget, Slavko Čeru, Sabina Rabzelj, Magda Tušek-Žnidarič, Eva Žerovnik, "Human stefin B: interaction with amyloid-beta protein", V: Zbornik povzetkov, 7. srečanje Slovenskega biokemijskega društva z mednarodno udeležbo, 26.-29. september 2007 = 7th Meeting of the Slovenian Biochemical Society with International Participation, Maribor, September 26th to 29th, 2007, Nataša Poklar Ulrih, ur., Veronika Abram, ur., Blaž Cigić, ur., Ljubljana, Slovensko biokemijsko društvo, = Slovenian Biochemical Society, 2007, str. 133. [COBISS.SI-ID 23232217]

1.16 Samostojni znanstveni sestavek ali poglavje v monografski publikaciji

2. Dušan Turk, "Density modification in MAIN", V: Evolving methods for macromolecular crystallography : proceedings of the NATO Advanced Study Institute on Evolving Methods for Macromolecular Crystallography: the structural path to the understanding of the mechanisms of action of CBRN agents, 19-28 May 2005, Erice, Italy, (NATO science series, series II., Mathematics, physics and chemistry, vol. 254), Randy J. Read, ur., Joel Sussman, ur., Springer Verlag, 2007, str. 111-122. [COBISS.SI-ID 21003303]

1.20 Predgovor, spremna beseda

2. Boris Turk, "Recent advances and future prospect in protease targeting. part II. : editorial", Curr. pharm. des., vol. 13, no. 4, str. 347-348, 2007. [COBISS.SI-ID 21565223]

1.22 Intervju

2. Vito Turk, "Finski zgled ne pomaga tistim, ki ga ne razumejo : Vito Turk med politiko in znanostjo", Delo (Ljubl.), letn. 49, št. 277, str. 35, 01.12.2007. [COBISS.SI-ID 21721895]

1.25 Drugi članki ali sestavki

MONOGRAFIJE IN DRUGA ZAKLJUČENA DELA

2.08 Doktorska disertacija

2. Dejan Caglič, Vloga lizosomskih cisteinskih katepsinov v človeških celičnih linijah hondrocitov : doktorska disertacija, Ljubljana, [D. Caglič], 2007. [COBISS.SI-ID 236679168]

3. Saška Ivanova, Proteini iz poddružin DLG, ZO in MAGI kot substrati celičnih proteaz med apoptozo : doktorska disertacija : doctoral thesis, [Ljubljana, S. Ivanova, 2007]. [COBISS.SI-ID 3059476]

4. Marko Mihelič, Interakcija mišjih in človeških katepsinov S in L z inhibitornim fragmentom invariantne verige p41 asociirane z molekulami MHC razreda II : doktorsko delo, Ljubljana, [M. Mihelič], 2007. [COBISS.SI-ID 231359744]

2.19 Radijska ali televizijska oddaja

2.24 Patent

IZVEDENA DELA (DOGODKI)

3.14 Predavanje na tuji univerzi

2. Nataša Kopitar-Jerala, Lysosomal proteinases in innate and adaptive immune response : invited talk presented at 12th International Tuzla summer seminar, Tuzla, University of Tuzla, University of Pharmacy, 4 July 2007. [COBISS.SI-ID 20863015]

3. Veronika Stoka, Lysosomal cysteine cathepsins and their role in apoptosis : invited talk, Buenos Aires, Instituto de Investigaciones Biotechnologicas, UNSAM, 29 Nov. 2007. [COBISS.SI-ID 21421351]

4. Veronika Stoka, Mechanisms of activation and regulation of neuronal cell death : invited talk, Buenos Aires, Maimonides University, Department of Psychiatry, 30 Nov. 2007. [COBISS.SI-ID 21421607]

5. Veronika Stoka, Role of lysosomal cysteine cathepsins in apoptosis : invited talk, Buenos Aires, University of Buenos Aires, Faculty of Exact and Natural Sciences, Department of Biological Chemistry, 28 Nov. 2007. [COBISS.SI-ID 21421095]

6. Boris Turk, Protease signalling and cysteine cathepsins : the role in antigen processing and apoptosis : invited talk, Zagreb, University of Zagreb, School of Medicine, 6 June 2007. [COBISS.SI-ID 20807207]

7. Tina Zavašnik-Bergant, Role of proteolytic enzymes and their inhibitors in antigen presentation : invited talk, České Budějovice, University of South Bohemia, Faculty of Biological Sciences, 6 March 2007. [COBISS.SI-ID 20621863]

8. Tina Zavašnik-Bergant, Tissue microarrays-from technology to clinical applications : invited talk presented at 12th International Tuzla summer seminar, Tuzla, University of Tuzla, University of Pharmacy, 4 July 2007. [COBISS.SI-ID 20862759]

9. Eva Žerovnik, Proposing a model for stefin B amyloid fibrilation : invited talk presented at 12th International Tuzla summer seminar, Tuzla, University of Tuzla, University of Pharmacy, 2 July 2007. [COBISS.SI-ID 20889639]

3.15 Prispevek na konferenci brez natisa

SEKUNDARNO AVTORSTVO

Urednik

2. Biological chemistry, Turk Boris (član uredniškega odbora 2003-), Berlin, New York, Walter de Gruyter, ISSN 1431-6730. [COBISS.SI-ID 1541908]

3. Current pharmaceutical design, Turk Boris (gostujoči urednik 2007-), Schiphol, Bentham Science Publishers, ISSN 1381-6128. [COBISS.SI-ID 16094247]

4. Biochimica et biophysica acta. Proteins and proteomics, Turk Vito (član uredniškega odbora 2004-), Amsterdam, London, New York, Oxford, Paris, Shannon, Tokyo, Elsevier, ISSN 1570-9639. [COBISS.SI-ID 512151833]

5. Current protein and peptide science, Turk Vito (član uredniškega odbora 2001-), Hilversum, Bentham Science Publishers, ISSN 1389-2037. [COBISS.SI-ID 512185625]

6. Amyloid, Žerovnik Eva (član uredniškega odbora 2005-), Carnforth, Parthenon, ISSN 1350-6129. [COBISS.SI-ID 512143641]

Mentor pri doktorskih disertacijah

2. Dejan Caglič, Vloga lizosomskih cisteinskih katepsinov v človeških celičnih linijah hondrocitov : doktorska disertacija, Ljubljana, [D. Caglič], 2007. [COBISS.SI-ID 236679168]

3. Saška Ivanova, Proteini iz poddružin DLG, ZO in MAGI kot substrati celičnih proteaz med apoptozo : doktorska disertacija : doctoral thesis, [Ljubljana, S. Ivanova, 2007]. [COBISS.SI-ID 3059476]

4. Marko Mihelič, Interakcija mišjih in človeških katepsinov S in L z inhibitornim fragmentom invariantne verige p41 asociirane z molekulami MHC razreda II : doktorsko delo, Ljubljana, [M. Mihelič], 2007. [COBISS.SI-ID 231359744]

5. Miha Pavšič, Vloga tiroglobulinskih modulov tipa 1 pri regulaciji aktivnosti proteaz : doktorska disertacija, Ljubljana, [M. Pavšič], 2007. [COBISS.SI-ID 60050689]

Mentor pri diplomskih delih

2. Jožef Molek, Določanje cepitvenih mest za kaspaze pri proteinu DLG1 : diplomsko delo, Ljubljana, [J. Molek], 2007. [COBISS.SI-ID 29005829]

3. Ivan Sergeevich Psakhye, Issledovanie vozmozhnosti ispoljzovanija bionanokompozicij "Nanochastici-srefini" v sistemah celevoj dostavki lekarstvennih sredstv : diplomnaja rabota, Tomsk, [I.S. Psakhye], 2007. [COBISS.SI-ID 20914983]

4. Nina Vidergar, Uporaba retrovirusne transdukcije za pripravo stabilnih linij celic, ki izražajo gene iz družine Cln : diplomsko delo, Ljubljana, [N. Vidergar], 2007. [COBISS.SI-ID 29006085]

Komentor pri doktorskih disertacijah

2. Tomaž Langerholc, Priprava in karakterizacija cistatina F ter njegova vloga pri antigenski predstavitvi : doktorska disertacija, Ljubljana, [T. Langerholc], 2007. [COBISS.SI-ID 3042068]

Komentor pri diplomskih delih

2. Nina Vidergar, Uporaba retrovirusne transdukcije za pripravo stabilnih linij celic, ki izražajo gene iz družine Cln : diplomsko delo, Ljubljana, [N. Vidergar], 2007. [COBISS.SI-ID 29006085]

Pisec recenzij

Član komisije za zagovor