Odsek za biokemijo in molekularno biologijo (B)

ČLANKI IN DRUGI SESTAVNI DELI

1.01 Izvirni znanstveni članek

2. Galia Blum, Stefanie R. Mullins, Kinneret Keren, Marko Fonović, Christopher Jedeszko, Mark J. Rice, Bonnie F. Sloane, Matthew Bogyo, "Dynamic imaging of protease activity with fluorescently quenched activity-based probes", Nature chemical biology, vol. 1, str. 203-209, 2005. [COBISS.SI-ID 19711527]

3. Tomaž Bratkovič, Mojca Lunder, Tatjana Popovič, Samo Kreft, Boris Turk, Borut Štrukelj, Uroš Urleb, "Affinity selection to papain yields potent peptide inhibitors of cathepsins L,B, H, and K", Biochem. biophys. res. commun., vol. 332, no. 3, str. 897-903, 2005. [COBISS.SI-ID 1749873]

4. Vesna Cerkvenik, Iztok Grabnar, Nevenka Kožuh Eržen, Irena Marc, Urška Požgan, Mitja Gombač, Lucija Kolar, Milan Pogačnik, "Pharmacokinetics of doramectin in lactating dairy sheep and suckling lambs", Anal. chim. acta, vol. 529, str. 353-359, 2005. [COBISS.SI-ID 2237050]

5. Tomaž Curk, Janez Demšar, Xu Qikai, Gregor Leban, Uroš Petrovič, Ivan Bratko, Gad Shaulsky, Blaž Zupan, "Microarray data mining with visual programming", Bioinformatics (Oxf., Print), vol. 21, no. 3, str. 396-398, 2005. [COBISS.SI-ID 4563284]

6. Slavko Čeru, Sabina Rabzelj, Nataša Kopitar-Jerala, Vito Turk, Eva Žerovnik, "Protein aggregation as a possible cause for pathology in a subset of familial Unverricht-Lundborg disease", Med. hypotheses, vol. 64, str. 955-959, 2005. [COBISS.SI-ID 18913575]

7. Laura Fontana, Yan Chen, Petra Prijatelj, Takao Sakai, Reinhard Fassler, Lynn Y. Sakai, Daniel B. Rifkin, "Fibronectin is required for integrin aplhavbeta6-mediated activation of latent TGF-beta complexes containing LTBP-1", FASEB j., vol. 19, str. 1798-1808, 2005. [COBISS.SI-ID 19528487]

8. Katja Galeša, Jože Brzin, Jerica Sabotič, Dušan Turk, "Crystallization and preliminary X-ray crystallographic analysis of the cysteine protease inhibitor clitocypin", Acta crystallographica. Section F, Structural biology and crystallization communications, vol. 62, str. 10-12, 2006. [COBISS.SI-ID 19600679]

9. Helena Gradišar, Jožica Friedrich, Igor Križaj, Roman Jerala, "Similarities and specificities of fungal keratinolytic proteases : keratinases of Paecilomyces marquandii and Doratomyces microsporus in comparison to some known proteases", Appl. environ. microbiol., vol. 71, no.7, str. 3420-3426, 2005. [COBISS.SI-ID 3234586]

10. Uroš Gregorc, Andreja Doberšek, Guy S. Salvesen, Vito Turk, Boris Turk, Nataša Kopitar-Jerala, "A novel caspase-7 specific monoclonal antibody", Immunol. lett., vol. 98, str. 167-169, 2005. [COBISS.SI-ID 18910759]

11. Uroš Gregorc, Saška Ivanova, Miranda Thomas, Vito Turk, Lawrence Banks, Boris Turk, "hDLG/SAP97, a member of the MAGUK protein family, is a novel caspase target during cell-cell detachment in apoptosis", Biol. chem. (Print), vol. 386, str. 705-710, 2005. [COBISS.SI-ID 19179815]

12. Mirjana Grujić, Tina Zavašnik-Bergant, Gunnar Pejler, Metka Renko, "Actinonin induces apoptosis in U937 leukemia cells", Cancer lett., vol. 223, str. 211-218, 2005. [COBISS.SI-ID 19104039]

13. Martin Horn, Lucie Dolečková-Marešová, Lubomir Rulíšek, Martin Máša, Olga Vasiljeva, Boris Turk, Tudeviin Gan-Erdene, Miroslav Baudyš, Michael Mareš, "Activation processing of cathepsin H impairs recognition by its propeptide", Biol. chem. (Print), vol. 386, str. 941-947, 2005. [COBISS.SI-ID 19319079]

14. Shin-Rong Hwang, Veronika Stoka, Vito Turk, Vivian Yuan-Wen Ho Hook, "The novel bovine serpin endopin 2C demonstrates selective inhibition of the cysteine protease cathepsin L compared to the serine protease elastase, in cross-class inhibition", Biochemistry (Easton), vol. 44, str. 7757-7767, 2005. [COBISS.SI-ID 19055143]

15. Saša Jenko, Veronika Stoka, Manca Kenig, Gregor Gunčar, Dušan Turk, Eva Žerovnik, "A central role for protein aggregation in neurodegenerative disease : mechanistic and structural studies of human stefins", Acta chim. slov., vol. 52, str. 27-33, 2005. [COBISS.SI-ID 18849063]

16. Matjaž Jeras, Martina Bergant, Urška Repnik, "In vitro preparation and functional assessment of human monocyte-derived dendritic cells - potential antigen-specific modulators of in vivo immune responses", Transpl. immunol., vol. 14, str. 231-244, 2005. [COBISS.SI-ID 19720231]

17. E. V. Klisho, I. V. Kondakova, E. L. Choinzonov, Olga Vasiljeva, "Prognosticheskaya znachimostj proteaz u boljnih ploskokletochnymi karcinomami golovy i shei", Bûll. Sib. otd. Ross. akad. med. nauk (Print), vol. 116, str. 82-91, 2005. [COBISS.SI-ID 19878695]

18. Nataša Kopitar-Jerala, Ana Schweiger, Richard M. Myers, Vito Turk, Boris Turk, "Sensitization of stefin B-deficiet thymocytes towards staurosporin-induced apoptosis is independent of cysteine cathepins", FEBS lett., vol. 579, str. 2149-2155, 2005. [COBISS.SI-ID 18952999]

19. Dušan Kordiš, "A genomic perspective on the chromodomain-containing retrotransposons : chromoviruses", Gene, str. 161-173, 2005. [COBISS.SI-ID 18950183]

20. Janko Kos, Andreja Sekirnik, Aleš Premzl, Tina Zavašnik-Bergant, Tomaž Langerholc, Boris Turk, Bernd Werle, Rastko Golouh, Urška Repnik, Matjaž Jeras, Vito Turk, "Carboxypeptidases cathepsins X and B display distinct protein profile in human cells and tissues", Exp. cell res., vol. 306, str. 103-113, 2005. [COBISS.SI-ID 19009063]

21. Blaž Kralj, Igor Križaj, Peter Bukovec, Simon Slejko, Radmila Milačič, "Speciation of aluminium in tea infusions by use of SEC and FPLC with ICP-OES and ES-MS-MS detection", Anal. bioanal. chem., vol. 383, str. 467-475, 2005. [COBISS.SI-ID 19360039]

22. Tomaž Langerholc, Tina Zavašnik-Bergant, Boris Turk, Vito Turk, Magnus Abrahamson, Janko Kos, "Inhibitory properties of cystatin F and its localiation in U937 promonocyte cells", Eur. j. biochem., vol. 272, str. 1535-1545, 2005. [COBISS.SI-ID 18915111]

23. Gregor Leban, Ivan Bratko, Uroš Petrovič, Tomaž Curk, Blaž Zupan, "VizRank : finding informative data projections in functional genomics by machine learning", Bioinformatics (Oxf., Print), vol. 21, no. 3, str. 413-414, 2005. [COBISS.SI-ID 4562772]

24. Yoichi Matsunaga, Eva Žerovnik, Yamada Tatsuo, Vito Turk, "Conformational changes preceding amyloid-fibril formation of amyloid-beta, prin protein and stefin B : parallels in pH dependence", Medicinal chemistry reviews, vol. 2, str. 359-367, 2005. [COBISS.SI-ID 19239207]

25. Primož Meh, Miha Pavšič, Vito Turk, Antonio Baici, Brigita Lenarčič, "Dual concentration-dependent activity of thyroglobulin type-1 domain of testican : specific inhibitor and substrate of cathepsin L", Biol. chem. (Print), vol. 386, str. 75-83, 2005. [COBISS.SI-ID 18921255]

26. Fábio Nascimento, Claudia C.A. Rizzi, Iseli L. Nantes, Ivica Klemenčič, Boris Turk, Adriana K. Carmona, Helena B. Nader, Luiz Juliano, Ivarne L.S. Tersariol, "Cathepsin X bind to cell surface heparan sulfate proteoglycans", Arch. biochem. biophys., vol. 436, str. 323-332, 2005. [COBISS.SI-ID 18926887]

27. Toni Petan, Igor Križaj, Michael H. Gelb, Jože Pungerčar, "Ammodytoxins, potent presynaptic neurotoxins, are also highly efficient phospholipase A[sub]2 enzymes", Biochemistry (Easton), vol. 44, str. 12535-12545, 2005. [COBISS.SI-ID 19250727]

28. Uroš Petrovič, Jernej Šribar, Maja Matis, Gregor Anderluh, Jasna Peter Katalinić, Igor Križaj, Franc Gubenšek, "Ammodytoxin, a secretory phospholipase A[sub]2, inhibits G[sub]2 cell-cycle", Biochem. j. (Lond., 1984), vol. 391, str. 383-388, 2005. [COBISS.SI-ID 19336231]

29. Luciano Puzer, Simone S. Cotrin, Maria H. S. Cezari, Izaura Y. Hitara, Maria A. Juliano, Ivica Klemenčič, Dušan Turk, Boris Turk, Luiz Juliano, Adriana K. Carmona, "Recombinant human cathepsin X is carboxymonopeptidase only : a comparison with cathepsins B and L", Biol. chem. (Print), vol. 386, str. 1191-1195, 2005. [COBISS.SI-ID 19495463]

30. Sabina Rabzelj, Vito Turk, Eva Žerovnik, "In vitro study of stability and amyloid-fibril formation of two mutants of human stefin B (cystatin B) occurring in patients with EPM 1", Protein sci., vol. 14, str. 2713-2722, 2005. [COBISS.SI-ID 19330087]

31. Lucia Sacchi, Riccardo Bellazzi, Cristiana Larizza, Paolo Magni, Tomaž Curk, Uroš Petrovič, Blaž Zupan, "Ta-clustering : cluster analysis of gene expression profiles through temporal abstractions", International journal of medical informatics, vol. 74, str. 505-517, 2005. [COBISS.SI-ID 19234599]

32. Veronika Stoka, S. F. Chen, Vito Turk, Dale E. Bredesen, "Developmental shift in the apostat : comparison of neurones and astrocytes", FEBS lett., vol. 579, str. 6147-6150, 2005. [COBISS.SI-ID 19703079]

33. Veronika Stoka, Boris Turk, Vito Turk, "Lysosomal cysteine protease : structural features and their role in apoptosis", IUBMB life, vol. 57, str. 347-353, 2005. [COBISS.SI-ID 19103527]

34. Jernej Šribar, Gregor Anderluh, Jay W. Fox, Igor Križaj, "Protein disulphide isomerase binds ammodytoxin strongly : possible implications for toxin trafficking", Biochem. biophys. res. commun., vol. 329, str. 741-745, 2005. [COBISS.SI-ID 18862119]

35. Boris Turk, Dušan Turk, Guy S. Salvesen, "Regulation cysteine protease activity : essential role of protease inhibitors as guardians and regulators", Medicinal chemistry reviews, vol. 2, str. 283-197, 2005. [COBISS.SI-ID 19191079]

36. Olga Vasiljeva, Marko Dolinar, Jerica Rozman Pungerčar, Vito Turk, Boris Turk, "Recombinant human procathepsin S is capable of autocatalytic processing at neutral pH in the presence of glycosaminoglycans", FEBS lett., vol. 579, str. 1285-1290, 2005. [COBISS.SI-ID 18842407]

37. Tina Zavašnik-Bergant, Urška Repnik, Ana Schweiger, Rok Romih, Matjaž Jeras, Vito Turk, Janko Kos, "Differentiation- and maturation-dependent content, localization, and secretion of cystatin C in human dendritic cells", J. leukoc. biol., vol. 78, str. 122-134, 2005. [COBISS.SI-ID 19080999]

1.06 Objavljeni znanstveni prispevek na konferenci (vabljeno predavanje)

2. Dušan Turk, "Papain-like cathepsins : potential drug target", V: Evolutionary methods for macromolecular crystallography : lecture notes, 37th Course, a Nato ASI and a EuroSummer School, [Erice, International School of Crystallography], 2005, str. 111-112. [COBISS.SI-ID 19846439]

1.08 Objavljeni znanstveni prispevek na konferenci

2. Dušan Kordiš, "Evolucijska genomika retroelementov pri kopenskih vretenčarjih (Tetrapoda)", V: Zbornik, Prvo srečanje slovenskih bioinformatikov, Ljubljana, 2. december 2005, Gregor Anderluh, ur., 1. izd., Ljubljana, Fakulteta za računalništvo in informatiko, 2005, str. 52-53. [COBISS.SI-ID 19485991]

3. Uroš Petrovič, Mojca Mattiazzi, Tomaž Curk, Blaž Zupan, Igor Križaj, "Od genomike k fenomiki : kaj se lahko naučimo od modelnih organizmov in kakšna orodja bioinformatike potrebujemo", V: Zbornik, Prvo srečanje slovenskih bioinformatikov, Ljubljana, 2. december 2005, Gregor Anderluh, ur., 1. izd., Ljubljana, Fakulteta za računalništvo in informatiko, 2005, str. 23-26. [COBISS.SI-ID 19485223]

4. Mihaela Ploscaru, Marko Uplaznik, Aleš Mrzel, Maja Remškar, Saša Jenko, Dušan Turk, Damjan Vengust, Dragan Mihailović, "Self-assembly of gold particles to MoS[sub]xI[sub]y nanowires ends", V: Electronic properties of novel nanostructures : XIX International Winterschool/Euroconference on electronic properties of novel materials, (AIP conference proceedings, 786), Melville, New York, American Institute of Physics, 2005, str. 374-377. [COBISS.SI-ID 19408679]

5. Tina Zavašnik-Bergant, Janko Kos, "Possible regulation of proteolytic enzymes in human tingible body macrophages", V: Proceedings, 7th Multinational Congress on Microscopy, June 26-30, 2005, Portorož, Slovenia, Miran Čeh, ur., Goran Dražić, ur., Sanja Fidler, ur., Ljubljana, Slovene Society for Microscopy, Department for Nanostructured Materials, "Jožef Stefan" Institute, 2005, str. 423-424. [COBISS.SI-ID 19600089]

6. Tina Zavašnik-Bergant, Urška Repnik, Rok Romih, "Inhibitor cystatin C in the TNF-[alpha] and LPS stimulated dendritic cells", V: Proceedings, 7th Multinational Congress on Microscopy, June 26-30, 2005, Portorož, Slovenia, Miran Čeh, ur., Goran Dražić, ur., Sanja Fidler, ur., Ljubljana, Slovene Society for Microscopy, Department for Nanostructured Materials, "Jožef Stefan" Institute, 2005, str. 425-426. [COBISS.SI-ID 19600345]

7. Eva Žerovnik, Sabina Rabzelj, Manca Kenig, Vito Turk, "Correlation between stability and propensity to form amyloid-like fibrils", V: Amyloid and amyloidosis : [extended abstracts presentations from the Xth International Symposium on Amyloidosis, Tours, France, April 18-22, 2004], Martha Skinner, ur., Gilles Grateau, ur., Robert A. Kyle, ur., Boca Raton [etc.], CRC, cop. 2005, str. 21-23. [COBISS.SI-ID 18917671]

1.12 Objavljeni povzetek znanstvenega prispevka na konferenci

2. Gregor Anderluh, Ion Gutiérrez-Aguirre, Sabina Rabzelj, Eva Žerovnik, "Amyloid proteins versus pore-forming toxins : prefibrilar oligomers of human stefin B interact with permeabilise lipid membranes", V: Abstract book : [Neuroscience `05 : neurobiology, neurology, psychiatry, cognitive neuroscience], Sinapsa Neuroscience Symposium, 18th-20th November 2005, Ljubljana, Slovenia_, Damjan Osredkar, ur., Blaž Koritnik, ur., Jure Bon, ur., Ljubljana, Sinapsa, Slovenian Neuroscience Association, 2005, str. 55. [COBISS.SI-ID 19437095]

3. Gregor Anderluh, Ion Gutirrez-Aguirre, Sabina Rabzelj, Eva Žerovnik, "Prefibrillar oligomers of human stefin B (Cystatin B) interact with membranes", V: Molecular mechanisms of neurodegeneration: a joint Biochemical Society/Neuroscience Ireland Focused Meeting and satellite symposium : University College Dublin, Republic of Ireland, 14-16 March 2005 : programme & abstracts, [The Biochemical Society], 2005, 2005, str. 14. [COBISS.SI-ID 18931239]

4. Miha Andrejašič, Dušan Turk, "PURY : a general parameter set generator for geometry of macromolecular structures", V: Evolutionary methods for macromolecular crystallography : lecture notes, 37th Course, a Nato ASI and a EuroSummer School, [Erice, International School of Crystallography], 2005, str. 182. [COBISS.SI-ID 20686887]

5. Aleš Berlec, Zala Jevnikar, Andreja Čanžek Majhenič, Irena Rogelj, Borut Štrukelj, "Expression of sweet-tasting protein brazzein in lactic-acid bacterium Lactococcus lactis", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005, str. 135. [COBISS.SI-ID 1797745]

6. Aleš Berlec, Zala Jevnikar, Andreja Čanžek Majhenič, Irena Rogelj, Borut Štrukelj, "Sweet probiotics : expression of sweet-tasting protein brazzein in Lactococcus lactis", V: Prospects for health, well-being & safety : delegate manual, 4th NIZO Dairy Conference, 15-17 June 2005, Arnhem, The Netherland, Oxford, Elsevier, 2005. [COBISS.SI-ID 19308071]

7. Lea Bojič, Gabriela Droga-Mazovec, Ana Petelin, Veronika Stoka, Kristina Orešić, Nataša Kopitar-Jerala, Guy S. Salvesen, Vito Turk, Boris Turk, "Protease signaling : the cysteine cathepsins pathways to apoptosis story", V: Book of abstracts, IXth International Symposium on Proteinase Inhibitors and Biological Control, Brdo, Slovenia, June 25-29, 2005, Boris Turk, ur., Marko Dolinar, ur., Ljubljana, Jožef Stefan Institute, 2005, str. 50. [COBISS.SI-ID 19129639]

8. Lea Bojič, Ana Petelin, Gabriela Droga-Mazovec, Rok Romih, Veronika Stoka, Vito Turk, Boris Turk, "Bid : an important mediator of cathepsin-induced apoptosis", V: 22st Winter School on Proteinases and their Inhibitors, Recent Developments : in Tiers (und St. Zyprian) at the Rosengarten, March 2-6,2005, [S.l., s.n.], 2005, str. 18. [COBISS.SI-ID 18882855]

9. Lea Bojič, Ana Petelin, Gabriela Droga-Mazovec, Rok Romih, Veronika Stoka, Vito Turk, Boris Turk, "The Bcl-2 family membranes : mediators of cathepsin's-induced apoptosis", V: Programme and book of abstracts, [2nd Training Course on Concepts and Methods of Programmed Cell Death ] & 13th 13th ECDO Euroconference on Apoptosis, Budapest, Hungary, October 1-4,2005, Ghent, ECDO, 2005, str. P-23. [COBISS.SI-ID 19335463]

10. Lea Bojič, Ana Petelin, Gabriela Droga-Mazovec, Veronika Stoka, Nataša Kopitar-Jerala, Guy S. Salvesen, Vito Turk, Boris Turk, "Cysteine cathepsins as apoptosis mediators : [presented at 30th FEBS Congress and 9th IUBMB Conference, 2-7 July 2005, Budapest, Hungary]", European journal of biochemistry, Supplement, vol. 272, suppl. 1, str. 25, 2005. [COBISS.SI-ID 20029735]

11. Tomaž Bratkovič, Mojca Lunder, Tatjana Popovič, Samo Kreft, Uroš Urleb, Borut Štrukelj, "Peptide inhibitors of cathepsins L, B, H, and K selected through phage display", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005, str. 138. [COBISS.SI-ID 1798001]

12. Dejan Caglič, Tjaša Kumelj, Jerica Rozman Pungerčar, Gunnar Pejler, Boris Turk, "Mystery of glycosaminoglycans in the story of procathepsin B autoactivation", V: 22st Winter School on Proteinases and their Inhibitors, Recent Developments : in Tiers (und St. Zyprian) at the Rosengarten, March 2-6,2005, [S.l., s.n.], 2005, str. 21. [COBISS.SI-ID 18883367]

13. Dejan Caglič, Tjaša Kumelj, Jerica Rozman Pungerčar, Gunnar Pejler, Boris Turk, "The role of glycosaminoglycans in the story of procathepsin B autoactivation", V: Book of abstracts, IXth International Symposium on Proteinase Inhibitors and Biological Control, Brdo, Slovenia, June 25-29, 2005, Boris Turk, ur., Marko Dolinar, ur., Ljubljana, Jožef Stefan Institute, 2005, str. 74. [COBISS.SI-ID 19154215]

14. Dejan Caglič, Tjaša Kumelj, Jerica Rozman Pungerčar, Gunnar Pejler, Boris Turk, "The role of glycosaminoglycans in the story of procathepsin B autoactivation", V: 4th General Meeting of the International Proteolysis Society, IPS, associated with the International Conference on Protease Inhibitor : Quebec City, Canada, October 15th-19th, 2005, [S.l.], IPS, 2005, str. 81. [COBISS.SI-ID 19386663]

15. Dejan Caglič, Urška Požgan, Jerica Rozman Pungerčar, Boris Turk, "Role of lysosomal cathepsins in osteoarthritis and rheumatoid arthritis", V: Febs course on Advanced Light Microscopy and 5th International Meeting of ELMI : Semmering, Austria, May 31-June 3, 2005 : meeting programe, abstract book, list of participants, [S.l.], European Light Microscopy Initiative, 2005, str. 71. [COBISS.SI-ID 19074087]

16. Slavko Čeru, Sabina Rabzelj, Nataša Kopitar-Jerala, Vito Turk, Eva Žerovnik, "Higher oligomers and prefibrillar aggregates of stefn B, which is not involved in any amyloid pathology, are toxic to cells", V: Abstract book : [Neuroscience `05 : neurobiology, neurology, psychiatry, cognitive neuroscience], Sinapsa Neuroscience Symposium, 18th-20th November 2005, Ljubljana, Slovenia_, Damjan Osredkar, ur., Blaž Koritnik, ur., Jure Bon, ur., Ljubljana, Sinapsa, Slovenian Neuroscience Association, 2005, str. 84. [COBISS.SI-ID 19437607]

17. Slavko Čeru, Sabina Rabzelj, Nataša Kopitar-Jerala, Vito Turk, Eva Žerovnik, "Stefin B protein which is not involved in any amyloid pathology is toxic to cells only in higher profibrillar oligomeric forms", V: Book of abstracts, IXth International Symposium on Proteinase Inhibitors and Biological Control, Brdo, Slovenia, June 25-29, 2005, Boris Turk, ur., Marko Dolinar, ur., Ljubljana, Jožef Stefan Institute, 2005, str. 76. [COBISS.SI-ID 19130407]

18. Slavko Čeru, Sabina Rabzelj, Nataša Kopitar-Jerala, Vito Turk, Eva Žerovnik, "Toxicity of oligomers but not the monomers of amyloidogenic proteins : case study of human stefins", V: Second Meeting on Molecular Mechanisms of Neurodegeneration : Aula Magna dell'Universita' degli Studi di Milano, Milan, Italy, 7-10 May 2005, [S.l., s.n.], 2005. [COBISS.SI-ID 19050535]

19. Slavko Čeru, Eva Žerovnik, Vito Turk, Nataša Kopitar-Jerala, "Constructing stefin B and two variants of procathepsin L proteins fused with GFP for visualizing protein-protein interaction in living cell with fluorescence resonance energy transfer (FRET) method", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005, str. 95. [COBISS.SI-ID 19745831]

20. Ndeye Ndack Diop, Marjetka Kidrič, A. Repellin, Monique Gareil, Yasmine Zuily-Fodil, "Multicystatins are induced by drought-stress in Cowpea (Vigna unguiculata (L.)Walp) leaves", V: Abstracts : XVII IBC 2005, XVII International Botanical Congress, Vienna, Austria, 17-23 July 2005, [Vienna, s. n., 2005], str. 535. [COBISS.SI-ID 19663655]

21. Iztok Dolenc, Tajana Zajc, Vito Turk, "Expression of recombinant lysosomal dipeptidase", V: Book of abstracts, IXth International Symposium on Proteinase Inhibitors and Biological Control, Brdo, Slovenia, June 25-29, 2005, Boris Turk, ur., Marko Dolinar, ur., Ljubljana, Jožef Stefan Institute, 2005, str. 87. [COBISS.SI-ID 19155751]

22. Gabriela Droga-Mazovec, Lea Bojič, Ana Petelin, Rok Romih, Veronika Stoka, Vito Turk, Boris Turk, "The antiapoptotic Bcl-2 protein as a mediator of lysosomal protease-induced apoptosis in HeLa and MCF-7 cells", V: Book of abstracts, IXth International Symposium on Proteinase Inhibitors and Biological Control, Brdo, Slovenia, June 25-29, 2005, Boris Turk, ur., Marko Dolinar, ur., Ljubljana, Jožef Stefan Institute, 2005, str. 85. [COBISS.SI-ID 19155495]

23. Gabriela Droga-Mazovec, Lea Bojič, Ana Petelin, Rok Romih, Veronika Stoka, Vito Turk, Boris Turk, "The antipoptotic Bcl-2 protein as a mediator of lysosomal protease-induced apoptosis in Hela and MCF-7 cells", V: Book of abstracts, IXth International Symposium on Proteinase Inhibitors and Biological Control, Brdo, Slovenia, June 25-29, 2005, Boris Turk, ur., Marko Dolinar, ur., Ljubljana, Jožef Stefan Institute, 2005, str. 85. [COBISS.SI-ID 19129895]

24. Shin-Rong Hwang, Veronika Stoka, Vito Turk, Vivian Yuan-Wen Ho Hook, "The novel serpin endopin 2C demonstrates selective inhibition of the cysteine protease cathepsin L compared to the serine protease elastase in cross-class inhibition", V: 4th General Meeting of the International Proteolysis Society, IPS, associated with the International Conference on Protease Inhibitor : Quebec City, Canada, October 15th-19th, 2005, [S.l.], IPS, 2005, str. 204. [COBISS.SI-ID 19593511]

25. Saška Ivanova, Uroš Gregorc, Lawrence Banks, David S. Bredt, Ron Javier, Peter Vandenabeele, Vito Turk, Boris Turk, "Members of the MAGUK family are substrates for the executioner caspases and cathespins, but not for serine protease Omi/HtrA2", V: Book of abstracts, IXth International Symposium on Proteinase Inhibitors and Biological Control, Brdo, Slovenia, June 25-29, 2005, Boris Turk, ur., Marko Dolinar, ur., Ljubljana, Jožef Stefan Institute, 2005, str. 84. [COBISS.SI-ID 19155239]

26. Saška Ivanova, Uroš Gregorc, Lawrence Banks, David S. Bredt, Ron Javier, Peter Vandenabeele, Vito Turk, Boris Turk, "Membranes of the MAGUK family are substrates for the executioner caspases and cathepsins, but not for serine protease Omi", V: Programme and book of abstracts, [2nd Training Course on Concepts and Methods of Programmed Cell Death ] & 13th 13th ECDO Euroconference on Apoptosis, Budapest, Hungary, October 1-4,2005, Ghent, ECDO, 2005, p-92. [COBISS.SI-ID 19335207]

27. Saša Jenko, Gregor Gunčar, Igor Štern, Sabina Rabzelj, Manca Kenig, Eva Žerovnik, Dušan Turk, "Amyloid fibril formation of stefins : after domain swap comes loop swap", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005, str. 34. [COBISS.SI-ID 19364391]

28. Saša Jenko, Gregor Gunčar, Eva Žerovnik, Dušan Turk, "Crystal structure of stefin B site-specific mutant : tetrameter - the second step in amyloid fibril formation?", V: 22st Winter School on Proteinases and their Inhibitors, Recent Developments : in Tiers (und St. Zyprian) at the Rosengarten, March 2-6,2005, [S.l., s.n.], 2005, str. 40. [COBISS.SI-ID 18883879]

29. Saša Jenko, Gregor Gunčar, Eva Žerovnik, Dušan Turk, "Proline isomerization in stefin B : a crucial step towards amyloid fibril formation", V: XX Congress of the International Union of Crystallography [also] Florence IUCr2005 : Florence (Italy), 23-31 August 2005 : book of abstracts, [S. l., s. n.], 2005, str. C263. [COBISS.SI-ID 19364135]

30. Saša Jenko, Mihaela Ploscaru, Damjan Vengust, Aleš Mrzel, Gregor Gunčar, Eva Žerovnik, Klaudia Brix, Dragan Mihailović, Dušan Turk, "Immobilization of proteins onto MoSxly nanowires", V: SLONANO 2005 : programme and book of abstracts, 4th Symposium of science and technology of nanomaterials in Slovenia, October 24th -25th, 2005, Ljubljana, Slovenia, Ljubljana, Jozef Stefan Institute, National Institute of Chemistry, 2005, str. 38. [COBISS.SI-ID 19393575]

31. Zala Jenko, Uroš Logonder, Igor Križaj, Jože Pungerčar, "Is ammodytoxin A, a presynaptically neurotoxic phospholipase A2, internalized into motoneurons? : invited talk", V: Abstract book : [Neuroscience `05 : neurobiology, neurology, psychiatry, cognitive neuroscience], Sinapsa Neuroscience Symposium, 18th-20th November 2005, Ljubljana, Slovenia_, Damjan Osredkar, ur., Blaž Koritnik, ur., Jure Bon, ur., Ljubljana, Sinapsa, Slovenian Neuroscience Association, 2005, str. 46. [COBISS.SI-ID 19431207]

32. Zala Jenko, Toni Petan, P. Rusmini, Angelo Poletti, Jože Pungerčar, "Phospholipase A2 toxins are efficient enzymes and cytotoxic to motoneuronal cells", V: Second Meeting on Molecular Mechanisms of Neurodegeneration : Aula Magna dell'Universita' degli Studi di Milano, Milan, Italy, 7-10 May 2005, [S.l., s.n.], 2005. [COBISS.SI-ID 19051047]

33. Marjetka Kidrič, Branka Stefanović, "Proteolytic activities in response to water deficit in desiccation-tolerant and desiccation non-tolerant species of the family Gesneriaceae", V: Abstracts : XVII IBC 2005, XVII International Botanical Congress, Vienna, Austria, 17-23 July 2005, [Vienna, s. n., 2005], str. 536. [COBISS.SI-ID 19663911]

34. Marjetka Kidrič, Branka Stevanović, Maja Šoštarič, "Changer in serine protease activities on dehydration and rehydration of resurrection plant Ramonda serbica Panč.", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005, str. 153. [COBISS.SI-ID 19664423]

35. Nataša Kopitar-Jerala, Vito Turk, Boris Turk, "Interactions of stefin B with cysteine proteases in LPS stimulated and unstimilated THP-1 monocytes", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005, str. 26. [COBISS.SI-ID 19745575]

36. Nataša Kopitar-Jerala, Vito Turk, Boris Turk, "Interactins of cysteine proteinases with endogenous inhibitor stefin B in LPS stimulated and unstimilated THP-1 monocytes", V: Book of abstracts, IXth International Symposium on Proteinase Inhibitors and Biological Control, Brdo, Slovenia, June 25-29, 2005, Boris Turk, ur., Marko Dolinar, ur., Ljubljana, Jožef Stefan Institute, 2005, str. 75. [COBISS.SI-ID 19154471]

37. Dušan Kordiš, "Evolutionary genomics of chromoviruses in eukaryotes", V: Evolution 2005 : [book of abstracts] : 2005 annual meeting, June 10-14,2005, University of Alaska, Fairbanks, Alaska, [S.l., s.n.], 2005. [COBISS.SI-ID 19653415]

38. Dušan Kordiš, "Evolutionary genomics of retroelements in land vertebrates ((Tetrapoda) : invited talk", V: Genome and RNA: expression and functions : symposium on structural and evolutionary genomics : February 26 - March 2, 2005, Puntarenas, Costa Rica, [S.l., s.n.], 2005, str. 34. [COBISS.SI-ID 18950695]

39. Dušan Kordiš, Nika Lovšin, Franc Gubenšek, "Phylogenomic analysis of the L1 retrotransposons in vertebrates", V: MBE 2005, Molecular biology & evolution 2005 : 19-23 June, Auckland, New Zeland, Genetic Society of Austalasia, 005, [S. l.]. [COBISS.SI-ID 19653159]

40. Gregor Kosec, Vanina Alvarez, Boris Turk, Vito Turk, Juan José Cazzulo, "Autophagings of trypanosoma cruzi : cloning, expression and partial purification", V: Book of abstracts, IXth International Symposium on Proteinase Inhibitors and Biological Control, Brdo, Slovenia, June 25-29, 2005, Boris Turk, ur., Marko Dolinar, ur., Ljubljana, Jožef Stefan Institute, 2005, str. 116. [COBISS.SI-ID 19156263]

41. Blaž Kralj, Radmila Milačič, Igor Križaj, Peter Bukovec, "Speciation of Al in tea infusions and transformation of Al species in tea with milk or lemon", V: Aluminium : lithosphere to biosphere (and back), The Sixth Keele Meeting on Aluminium, 26th February - 2nd March, Buçaco, Portugal, [S.l.], Birchall Centre for Inorganic Chemistry and Materials Science, Keele University, Centro de Estudos do Ambiente e Mar, Universidade de Aveiro, 2005, str. 12. [COBISS.SI-ID 18928935]

42. Blaž Kralj, Radmila Milačič, Igor Križaj, Peter Bukovec, "Speciation of aluminium in tea infusions", V: Book of abstracts, 14th International Symposium Spectroscopy in Theory and Practice, Nova Gorica, Slovenia, April 10-13, 2005 = 14. mednarodni simpozij Spektroskopija v teoriji in praksi, Nova Gorica, Slovenija, 10.-13. april 2005, Polonca Trebše, ur., Nova Gorica, Politehnika, 2005, str. 21. [COBISS.SI-ID 19057191]

43. Blaž Kralj, Radmila Milačič, Igor Križaj, Peter Bukovec, "Speciation of aluminium in tea infusions bt the use of SEC and FPLC chromatography with ICP-OES and ES-MS-MS detection", V: European winter conference on plasma spectroscopy : 30 January - 3 February 2005, Budapest, Hungary : abstracts, [S.l., s.n.], 2005. [COBISS.SI-ID 18833703]

44. Aida Kriještovac, Selma Berbić, Manca Kenig, Eva Žerovnik, "Dimerization coupled to slow folding of P36G mutant of human stefin B", V: Abstract book : [Neuroscience `05 : neurobiology, neurology, psychiatry, cognitive neuroscience], Sinapsa Neuroscience Symposium, 18th-20th November 2005, Ljubljana, Slovenia_, Damjan Osredkar, ur., Blaž Koritnik, ur., Jure Bon, ur., Ljubljana, Sinapsa, Slovenian Neuroscience Association, 2005. [COBISS.SI-ID 19437863]

45. Igor Križaj, Jernej Šribar, Uroš Logonder, Lidija Kovačič, Mojca Mattiazzi, Uroš Petrovič, Jože Pungerčar, "The neurotoxicity of venom phospolipase A2, ammodytoxin : invited talk", V: Abstract book : [Neuroscience `05 : neurobiology, neurology, psychiatry, cognitive neuroscience], Sinapsa Neuroscience Symposium, 18th-20th November 2005, Ljubljana, Slovenia_, Damjan Osredkar, ur., Blaž Koritnik, ur., Jure Bon, ur., Ljubljana, Sinapsa, Slovenian Neuroscience Association, 2005, str. 57. [COBISS.SI-ID 19431463]

46. Tomaž Langerholc, Tina Zavašnik-Bergant, Vito Turk, Magnus Abrahamson, Janko Kos, "Unusual localization and inhibitory properties of cystatin F in U937 cells", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005, str. 107. [COBISS.SI-ID 1812081]

47. Brigita Lenarčič, Marko Novinec, Primož Meh, Vito Turk, "Evolution and functional diversity of the thyroglobulin type-1 domain superfamily", V: 4th General Meeting of the International Proteolysis Society, IPS, associated with the International Conference on Protease Inhibitor : Quebec City, Canada, October 15th-19th, 2005, [S.l.], IPS, 2005, str. 121. [COBISS.SI-ID 19638055]

48. Adrijana Leonardi, Jay W. Fox, Igor Križaj, "Two novel hemostatically active proteins from Vipera ammodytes ammodytes venon", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005, str. 110. [COBISS.SI-ID 19312423]

49. Barbara Malič, Marija Kosec, Janez Bernard, Janez Holc, Marko Hrovat, Vid Bobnar, "Alkaline-niobate based piezoelectrics and relaxors", V: Electroactive materials and sustainable growth : May 23-25,2005, Abbaye Les Vaux de Cernay, France : abstract book, [S.l.], [Thematic Network POLECER of the European Commission], 2005, str. 7-82. [COBISS.SI-ID 19667495]

50. Mojca Mattiazzi, Uroš Petrovič, Joseph L. DeRisi, Igor Križaj, "A mammalian phospholipase A2 in yeast : a global view : presented at XXIInd International Conference on Yeast Genetics and Molecular Biology, August 7-12,2005, Bratislava, Slovak Republik", Yeast (Chichester Engl.), vol. 22, str. S155, 2005. [COBISS.SI-ID 19264551]

51. Primož Meh, Vito Turk, Brigita Lenarčič, "Nidogen thyroglobulin type 1 domains", V: Book of abstracts, IXth International Symposium on Proteinase Inhibitors and Biological Control, Brdo, Slovenia, June 25-29, 2005, Boris Turk, ur., Marko Dolinar, ur., Ljubljana, Jožef Stefan Institute, 2005, str. 79. [COBISS.SI-ID 19154727]

52. Marko Mihelič, Gregor Gunčar, Andreja Doberšek, Dušan Turk, "Excluding specificity : evolution of a relationship between mouse and human cathepsins and invariant chain p41 fragment", V: Evolutionary methods for macromolecular crystallography : lecture notes, 37th Course, a Nato ASI and a EuroSummer School, [Erice, International School of Crystallography], 2005, str. 215. [COBISS.SI-ID 20686631]

53. Marko Mihelič, Gregor Gunčar, Andreja Doberšek, Dušan Turk, "Evolution of a relationship : cathepshins and MHC II invariant chain : [invited talk]", V: 4th General Meeting of the International Proteolysis Society, IPS, associated with the International Conference on Protease Inhibitor : Quebec City, Canada, October 15th-19th, 2005, [S.l.], IPS, 2005, str. 39. [COBISS.SI-ID 19705895]

54. Marko Mihelič, Gregor Gunčar, Andreja Doberšek, Dušan Turk, "Uporabnost 3-dimenzionalnih modelov makromolekularnih struktur -, Evolucija odnosa : katepsini in inhibitorni fragment invariantne verige : vabljeno predavanje", V: Zbornik, Prvo srečanje slovenskih bioinformatikov, Ljubljana, 2. december 2005, Gregor Anderluh, ur., 1. izd., Ljubljana, Fakulteta za računalništvo in informatiko, 2005, str. 43. [COBISS.SI-ID 19485735]

55. Marko Mihelič, Gregor Gunčar, Katja Galeša, Dušan Turk, "Inhibitory fragment of the p41 invariant chain can interact with mouse cathepsin S", V: 22st Winter School on Proteinases and their Inhibitors, Recent Developments : in Tiers (und St. Zyprian) at the Rosengarten, March 2-6,2005, [S.l., s.n.], 2005, str. 48. [COBISS.SI-ID 18884135]

56. Gareth Morgan, Eva Žerovnik, Jonathan P. Waltho, Rosemary A. Staniforth, "Structural studies on cystatin amyloid fibrils", V: Book of abstracts, IXth International Symposium on Proteinase Inhibitors and Biological Control, Brdo, Slovenia, June 25-29, 2005, Boris Turk, ur., Marko Dolinar, ur., Ljubljana, Jožef Stefan Institute, 2005, str. 44. [COBISS.SI-ID 19130151]

57. Gareth Morgan, Eva Žerovnik, Jonathan P. Waltho, Rosemary A. Staniforth, "Structural studies on cystatin fibrils", V: Molecular mechanisms of neurodegeneration: a joint Biochemical Society/Neuroscience Ireland Focused Meeting and satellite symposium : University College Dublin, Republic of Ireland, 14-16 March 2005 : programme & abstracts, [The Biochemical Society], 2005, 2005, str. 13. [COBISS.SI-ID 18922279]

58. Marko Novinec, Vito Turk, Brigita Lenarčič, "A recombinant SMOC-1 fragment is degraded by cysteine cathepsins", V: Book of abstracts, IXth International Symposium on Proteinase Inhibitors and Biological Control, Brdo, Slovenia, June 25-29, 2005, Boris Turk, ur., Marko Dolinar, ur., Ljubljana, Jožef Stefan Institute, 2005, str. 80. [COBISS.SI-ID 19154983]

59. Nataša Obermajer, Tina Zavašnik-Bergant, Boris Turk, Marko Kreft, Janko Kos, "The role of cysteine cathepsin X in adhesion of U937 cells", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005, str. 114. [COBISS.SI-ID 1797233]

60. Kristina Orešić, Brooke Baker, Caroline Ng, Domenico Tortorella, "HCMV US2- and US11 induced destruction of MHC class I as a model system to identify a component of the dislocon", V: Abstracts, 10th Symposium on Virus-Host Interactions, January 6th, 2005, New York, NY, USA, New York, New York Academy of Sciences, 2005. [COBISS.SI-ID 19204135]

61. Kristina Orešić, Domenico Tortorella, "Ricin toxin transport across the ER membrane", V: Mechanisms of Viral Antagonism and Immunity : Goldwurm auditorium, Friday, July 15, 2005 Mount Sinai School of Medicine, Mount Sinai, Mount Sinai School of Medicine, 2005, str. 11. [COBISS.SI-ID 19205415]

62. Kristina Orešić, Boris Turk, Domenico Tortorella, "TRAM1 is involved in the ER-to-cytosol dislocation of a membrane protein", V: Book of abstracts, IXth International Symposium on Proteinase Inhibitors and Biological Control, Brdo, Slovenia, June 25-29, 2005, Boris Turk, ur., Marko Dolinar, ur., Ljubljana, Jožef Stefan Institute, 2005, str. 67. [COBISS.SI-ID 19152167]

63. Christoph Peters, Olga Vasiljeva, Anna Papazoglu, Matvey Korovin, Harald Brodoefel, Achim Krüger, Thomas Reinheckel, "Role of tumor cell and and macrophage-derived cathepsin B in a mammary cancer model", V: 4th General Meeting of the International Proteolysis Society, IPS, associated with the International Conference on Protease Inhibitor : Quebec City, Canada, October 15th-19th, 2005, [S.l.], IPS, 2005, str. 138. [COBISS.SI-ID 19878439]

64. Uroš Petrovič, "DNA microarrays and Saccharomyces cerevisiae as a model system : what can we learn? : [invited talk]", V: Workshop on DNA microarray and proteomics : application to ecotoxicology : 19-20th May 2005, JRC-Ispra, Ispra, European Commission, Joint Research Centre, Institute for Environment and Sustainability, 2005. [COBISS.SI-ID 19045671]

65. Uroš Petrovič, Igor Križaj, "Role of Pex11p, a putative homologue of peroxisome proliferator-activated receptor, in fatty acid- and phospholipase A[sub]2-mediated cellular processe", V: Lipid-protein interaction in signalling and membrane traffic : FEBS advanced course : 10-15 June, 2005, S. Maria Imbaro (Chieti), Italy, S.l., FEBS, 2005, str. 85. [COBISS.SI-ID 19135271]

66. Uroš Petrovič, Mojca Mattiazzi, Janez Kokošar, Matej Jereb, Tomaž Curk, A. Jambhekar, Hárald Scholz, Heimo Wolinski, Joseph L. DeRisi, Blaž Zupan, Sepp D. Kohlwein, Igor Križaj, "Role of pex11, an evolutionary predecessor of nuclear receptors, in fatty acid signallig in yeast S. cerevisiae", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005. [COBISS.SI-ID 19312167]

67. Uroš Petrovič, Mojca Mattiazzi, Jernej Šribar, Heimo Wolinski, Hárald Scholz, Sepp D. Kohlwein, Igor Križaj, "Cellular processes affected by a phospholipase A2 in yeast : presented at XXIInd International Conference on Yeast Genetics and Molecular Biology, August 7-12,2005, Bratislava, Slovak Republik", Yeast (Chichester Engl.), vol. 22, str. S169, 2005. [COBISS.SI-ID 19223591]

68. Aleš Premzl, Janko Kos, "Cathepsin B in tumor progression and regulation of its activity by neutralising monoclonal antibody", V: Animal models : tips and tricks from nature : symposium handbook, Rome, Italy, May 12-14,2005, 1st International EMBL Monterotondo and Università di Roma di Tor Vergata PhD Students Symposium [and] 6th EMBL International Predoc Symposium, [S.l., s.n.], 2005, str. 48. [COBISS.SI-ID 19045159]

69. Aleš Premzl, Vito Turk, Janko Kos, "Contribution of extracellular and intracellular cathepsin B activity to the process of tumour progression", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005, str. 74. [COBISS.SI-ID 1795953]

70. Petra Prijatelj, Gabriela Ivanovski, Zala Jenko, Jože Pungerčar, Grazyna Faure, Igor Križaj, "The anticoagulant activity of ammodytoxin A is due to prothrombinase inhibitor", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005, str. 120. [COBISS.SI-ID 19312679]

71. Vida Puizdar, Marko Dolinar, Iztok Dolenc, Tina Zavašnik-Bergant, Marko Fonović, Ivica Klemenčič, Adrijana Leonardi, Boris Turk, Vito Turk, "Recombinant human cathepsin E splice variant", V: Book of abstracts, IXth International Symposium on Proteinase Inhibitors and Biological Control, Brdo, Slovenia, June 25-29, 2005, Boris Turk, ur., Marko Dolinar, ur., Ljubljana, Jožef Stefan Institute, 2005, str. 104. [COBISS.SI-ID 19156007]

72. Jože Pungerčar, Zala Jenko, Toni Petan, Petra Prijatelj, Uroš Petrovič, Jernej Šribar, Nina Vardjan, Igor Križaj, "Studies on toxic activities of secreted phospholipases A2 from the long-nosed viper : invited talk", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005, str. 17. [COBISS.SI-ID 19311399]

73. Sabina Rabzelj, Ion Gutiérrez-Aguirre, Gregor Anderluh, Vito Turk, Eva Žerovnik, "In vitro study of amyloid-fibril formation and lipid binding of human stefin band some of its mutants", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005, str. 122. [COBISS.SI-ID 19341351]

74. Sabina Rabzelj, Ion Gutiérrez-Aguirre, Gregor Anderluh, Vito Turk, Eva Žerovnik, "Amyloid-fibril formation and lipid binding of human stefin B and some of its mutants in vitro", V: Abstract book : [Neuroscience `05 : neurobiology, neurology, psychiatry, cognitive neuroscience], Sinapsa Neuroscience Symposium, 18th-20th November 2005, Ljubljana, Slovenia_, Damjan Osredkar, ur., Blaž Koritnik, ur., Jure Bon, ur., Ljubljana, Sinapsa, Slovenian Neuroscience Association, 2005, str. 83. [COBISS.SI-ID 19437351]

75. Sabina Rabzelj, Eva Žerovnik, "In vitro characterization of two mutants of human stefin B observed in EPM1", V: 22st Winter School on Proteinases and their Inhibitors, Recent Developments : in Tiers (und St. Zyprian) at the Rosengarten, March 2-6,2005, [S.l., s.n.], 2005, 56. [COBISS.SI-ID 18884391]

76. Miha Renko, Saša Jenko, Peter Panjan, Igor Muševič, Dragan Mihailović, Djordje Mandrino, Monika Jenko, Dušan Turk, "Cathepsin S bound to the surface retains its full activity", V: Book of abstracts, IXth International Symposium on Proteinase Inhibitors and Biological Control, Brdo, Slovenia, June 25-29, 2005, Boris Turk, ur., Marko Dolinar, ur., Ljubljana, Jožef Stefan Institute, 2005, str. 73. [COBISS.SI-ID 19153959]

77. Miha Renko, Saša Jenko, Peter Panjan, Igor Muševič, Dragan Mihailović, Djordje Mandrino, Monika Jenko, Dušan Turk, "Cathepsin S bound to the surface retains its full activity", V: SLONANO 2005 : programme and book of abstracts, 4th Symposium of science and technology of nanomaterials in Slovenia, October 24th -25th, 2005, Ljubljana, Slovenia, Ljubljana, Jozef Stefan Institute, National Institute of Chemistry, 2005, str. 31. [COBISS.SI-ID 19393063]

78. Jerica Sabotič, Katja Galeša, Tatjana Popovič, Jože Brzin, "Sequence variability and expression of recombinant clitocypin - cysteine proteinase inhibibtor from mushrooms", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005, str. 171. [COBISS.SI-ID 19574055]

79. Jerica Sabotič, Katja Galeša, Tatjana Popovič, Jože Brzin, "Sequence variability, gene structure, and expression of clitocypin - cysteine protease inhibitor from mushrooms", V: Book of abstracts, IXth International Symposium on Proteinase Inhibitors and Biological Control, Brdo, Slovenia, June 25-29, 2005, Boris Turk, ur., Marko Dolinar, ur., Ljubljana, Jožef Stefan Institute, 2005, str. 70. [COBISS.SI-ID 19152423]

80. Veronika Stoka, Sylvia Chen, Boris Turk, Dale E. Bredesen, "Mechanisms of activation and regulation of the intrinsic pathway of apoptosis during brain development and aging", V: Book of abstracts, International Cell Physiology & Engineering Meeting [and] 12th Young Neuroscientists Meeting [and] Advanced Microscopy Workshop = Mednarodni simpozij za celično fiziologijo in bioinženirstvo [in] 12. srečanje mladih nevroznanstvenikov [in] Delavnica za napredno mikroskopijo, Lipica, Slovenija, EU, 26.-29. 5. 2005, Marko Kreft, ur., Helena Chowdhury Haque, ur., Robert Zorec, ur., Ljubljana, Celica, 2005, str. 34. [COBISS.SI-ID 19067943]

81. Veronika Stoka, Sylvia Chen, Vito Turk, Dale E. Bredesen, "Regulation of the mitochondrial pathway of apoptosis during brain development and aging", V: Abstract book : [Neuroscience `05 : neurobiology, neurology, psychiatry, cognitive neuroscience], Sinapsa Neuroscience Symposium, 18th-20th November 2005, Ljubljana, Slovenia_, Damjan Osredkar, ur., Blaž Koritnik, ur., Jure Bon, ur., Ljubljana, Sinapsa, Slovenian Neuroscience Association, 2005, str. 58. [COBISS.SI-ID 19438375]

82. Veronika Stoka, Saša Jenko, Vito Turk, Eva Žerovnik, "Mechanism of amyloid fibril formation by human stefin-B as monitored using flow cytometry", V: Abstracts, 1st Interamerican Congress on Neurosciences, 18-19 August, Buenos Aires, Argentina. [COBISS.SI-ID 19512359]

83. Veronika Stoka, Saša Jenko, Vito Turk, Eva Žerovnik, "Mechanismo de formación de fibrilos amiloides de la estefina B humana : [presented at] 7° Congreso Argentino de Neuropsiquiatría, 3° Congreso Latinoamericano de Neuropsiquiatría, VIII Jornadas de la Enfermedad de Alzheimer", Neuropsiquiatría (B. Aires), no. 4, str. 59, 2005. [COBISS.SI-ID 19508007]

84. Veronika Stoka, Saša Jenko, Vito Turk, Eva Žerovnik, "Insigth into the mechanism of amyloid fibril formation by human stefin B using flow cytometry", V: Second Meeting on Molecular Mechanisms of Neurodegeneration : Aula Magna dell'Universita' degli Studi di Milano, Milan, Italy, 7-10 May 2005, [S.l., s.n.], 2005. [COBISS.SI-ID 19050791]

85. Katja Škerget, Saša Jenko, Dušan Turk, Eva Žerovnik, "Energetics of the two phases in amyloid-fibril formation", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005, str. 123. [COBISS.SI-ID 19341607]

86. Jernej Šribar, Jani Božič, Gregor Anderluh, Jay W. Fox, Igor Križaj, "Protein disulphide isomerase may play a role the neurotoxic action of ammodytoxin", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005, str. 18. [COBISS.SI-ID 19311655]

87. Boris Turk, Lea Bojič, Ana Petelin, Gabriela Droga-Mazovec, Veronika Stoka, Nataša Kopitar-Jerala, Guy S. Salvesen, Vito Turk, "Cysteine cathepsins pathways to apoptosis", V: Apoptosis and immunity 2005 : Novotel Palm Cove Resort, Australia 31st May - 3 June 2005 : abstracts and delegate information, [S.l., s. n.], 2005, str. 20. [COBISS.SI-ID 20031015]

88. Tom Turk, Igor Križaj, William R. Kem, "New type of sea anemone cytolysin isolated from the sea anemone Urticina crassicornis", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005, str. 19. [COBISS.SI-ID 19311911]

89. Vito Turk, Veronika Stoka, Boris Turk, "Human cysteine cathepsins : structure and function : invited talk presented at PABMB, 10th Congress of Panamerican Association for Biochemistry and Molecular Biology, 3-6 December, Buenos Aires, Argentina", Biocell (Mendoza), vol. 29, suppl. , str. 52, 2005. [COBISS.SI-ID 19547431]

90. Olga Vasiljeva, Anna Papazoglou, Matvey Korovin, Christoph Peters, Thomas Reinheckel, "Role of cysteine cathepsins in the mechanisms of mammary cancer progression inthe PyMT mouse model with different cathepsin B genotypes", V: 22st Winter School on Proteinases and their Inhibitors, Recent Developments : in Tiers (und St. Zyprian) at the Rosengarten, March 2-6,2005, [S.l., s.n.], 2005, str. 73. [COBISS.SI-ID 18884647]

91. Brit Wolters, Lars Bochmann, Nataša Kopitar-Jerala, Sabine Werner, Petra Boukamp, Klaudia Brix, "Cathepin L during keratinocyte migration", V: 22st Winter School on Proteinases and their Inhibitors, Recent Developments : in Tiers (und St. Zyprian) at the Rosengarten, March 2-6,2005, [S.l., s.n.], 2005, str. 19. [COBISS.SI-ID 18883111]

92. Tina Zavašnik-Bergant, Janko Kos, "Transport pathway of an inhibitor cystatin C in dendritic cells", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005, str. 25. [COBISS.SI-ID 1810545]

93. Tina Zavašnik-Bergant, Janko Kos, "Cystatic C protease inhibitor in dendritic cells", V: Animal models : tips and tricks from nature : symposium handbook, Rome, Italy, May 12-14,2005, 1st International EMBL Monterotondo and Università di Roma di Tor Vergata PhD Students Symposium [and] 6th EMBL International Predoc Symposium, [S.l., s.n.], 2005, str. 63. [COBISS.SI-ID 19044903]

94. Tina Zavašnik-Bergant, Urška Repnik, Rok Romih, Matjaž Jeras, Vito Turk, Janko Kos, "Cystatin C in human dendritic cells", V: 22st Winter School on Proteinases and their Inhibitors, Recent Developments : in Tiers (und St. Zyprian) at the Rosengarten, March 2-6,2005, [S.l., s.n.], 2005, str. 77. [COBISS.SI-ID 18884903]

95. Eva Žerovnik, Ion Gutierrez-Aguirre, Sabina Rabzelj, Gregor Anderluh, "Lipid binding of prrrefibrillar oligomers of human stefin B", V: Book of abstracts, IXth International Symposium on Proteinase Inhibitors and Biological Control, Brdo, Slovenia, June 25-29, 2005, Boris Turk, ur., Marko Dolinar, ur., Ljubljana, Jožef Stefan Institute, 2005, srr. 77. [COBISS.SI-ID 19130663]

96. Eva Žerovnik, Ion Gutierrez-Aguirre, Sabina Rabzelj, Slavko Čeru, Nataša Kopitar-Jerala, Gregor Anderluh, "Binding to phospholipid membranes of human stefin B (cystatin B) in prefibrilar form correlates with its weak toxicity", V: Second Meeting on Molecular Mechanisms of Neurodegeneration : Aula Magna dell'Universita' degli Studi di Milano, Milan, Italy, 7-10 May 2005, [S.l., s.n.], 2005. [COBISS.SI-ID 19050279]

97. Eva Žerovnik, Saša Jenko, Gregor Gunčar, Sabina Rabzelj, Katja Škerget, Veronika Stoka, Dušan Turk, "Human stefin B (cystatin B) as a good model system to study amyloid-fibril formation, Kinetics, morphology and structure", V: Abstract book : [Neuroscience `05 : neurobiology, neurology, psychiatry, cognitive neuroscience], Sinapsa Neuroscience Symposium, 18th-20th November 2005, Ljubljana, Slovenia_, Damjan Osredkar, ur., Blaž Koritnik, ur., Jure Bon, ur., Ljubljana, Sinapsa, Slovenian Neuroscience Association, 2005, str. 54. [COBISS.SI-ID 19436839]

98. Eva Žerovnik, Sabina Rabzelj, Katja Škerget, Silva Giannini, Veronika Stoka, Saša Jenko, Dušan Turk, Rosemary A. Staniforth, "New pieces in solving the puzzle of amyloid-fibril formation; with stefin B as a model protein", V: 6th Meeting of the Slovenian Biochemical Society with International Participation, Lipica, September 21-25, 2005, Janko Kos, ur., Nina Cimerman, ur., Marinka Drobnič-Košorok, ur., Ljubljana, Slovenian Biochemical Society, 2005, str. 35. [COBISS.SI-ID 19340583]

1.16 Samostojni znanstveni sestavek ali poglavje v monografski publikaciji

MONOGRAFIJE IN DRUGA ZAKLJUČENA DELA

2.24 Patent

IZVEDENA DELA (DOGODKI)

3.14 Predavanje na tuji univerzi

2. Boris Turk, Cysteine cathepins and their signaling pathways to apoptosis : invited talk, Galway, Ireland, National University of Ireland, Department of Biochemistry, 25 Nov. 2005. [COBISS.SI-ID 19495719]

3. Boris Turk, Protease signaling : cysteine cathepsins pathways to apoptosis : invited talk, Melbourne, Australia, Institute of Medical Research, 26 May 2005. [COBISS.SI-ID 19122727]

4. Boris Turk, Protease signaling : the cysteine cathepsins pathways-to-apoptosis story : invited talk, Brisbane, Australia, University of Queensland, School of Molecular & Microbial Sciences, 30 May 2005. [COBISS.SI-ID 19122983]

5. Boris Turk, Proteases signaling : cysteine cathepsins pathways to apoptosis : invited talk, Barcelona, Institut de Biotecnoogia i de Biomedicina, 19 Dec. 2005. [COBISS.SI-ID 19522087]

6. Dušan Turk, Amyloid fibril fomration of cystatins : domain swap then loop swap : invited talk, Upton, NY, Brookhaven National Laboratory, Biology Department, 26 oct. 2005. [COBISS.SI-ID 19842343]

7. Dušan Turk, Amyloid fibril formation of cystatins : domain swap then loop swap : invited talk, New York, NY, Columbia University, Department of Biochemistry & Molecular Biophysics, 25 October 2005. [COBISS.SI-ID 19841831]

8. Dušan Turk, MAIN 2004 : model building at 100 residues per monute : invited talk, Toronto, Canada, Faculty of Medicine, University of Totonto, 20 Oct. 2005. [COBISS.SI-ID 19842599]

9. Olga Vasiljeva, Role of cyteine cathepsins in the mechanisms of mammary cancer progression : invited talk, Heidelberg, German Cancer Research Center, Division of immunogenetics, 9 March 2005. [COBISS.SI-ID 19888167]

10. Tina Zavašnik-Bergant, The role of dendritic cells in antigen-specific immune response : invited talk, Tuzla, Bosnia and Herzegovina, University of Tuzla, Faculty of Pharmacy, 8 July 2005. [COBISS.SI-ID 19466535]

11. Eva Žerovnik, Amyloid-like fibrillisation of stefins : ongoing studies to define the mechanism : invited talk, Bath, UK, University of Bath, Department of Biology and Biochemistry, 4 Feb. 2005. [COBISS.SI-ID 18921511]

12. Eva Žerovnik, Human stefin B (cistatin B) as a good model system to study the mechanism of amyloid - fibril formation : invited talk from 10th Summer University, 4 July 2005, Tuzla, 2005. [COBISS.SI-ID 19130919]

13. Eva Žerovnik, Human stefin B as a suitable model protein to study the mechanism of amyloid-fibrillation and amyloid-induced toxicity : invited talk, Brescia, Italy, Centro S. Giovanni di Dio-Fatebenefratelli, Instituto di Ricovero e Cura a Carattere Scientifico, 11 May 2005. [COBISS.SI-ID 19049767]

14. Eva Žerovnik, Toxicity and lipid binding of prefibrilliar aggregates of amyloidogenic proteins : invited talk from 10th Summer University, 4 July 2005, Tuzla, 2005. [COBISS.SI-ID 19131175]

3.16 Vabljeno predavanje na konferenci brez natisa

3.25 Druga izvedena dela

2. Člana programskega odbora: Igor Križaj, Marija Kosec, Slovenski kemijski dnevi 2005, Maribor, 22. in 23. september 2005, 2005. [COBISS.SI-ID 19313191]

3. Member of the Organizing committee: Veronika Stoka, Sinapsa Neuroscience Symposium `05, 18th-20th November 2005, Ljubljana, Slovenia, 2005. [COBISS.SI-ID 19511847]

4. Member of the Organizers: Boris Turk, 22nd Winter School on Proteinases and their Inhibitors, Recent Developments : in Tiers/Italy, March 2nd-6th, 2005, 2005. [COBISS.SI-ID 18938407]

5. Member of the Program committee: Eva Žerovnik, Sinapsa Neuroscience Symposium `05, 18th-20th November 2005, Ljubljana,, 2005. [COBISS.SI-ID 19438119]

SEKUNDARNO AVTORSTVO

Urednik

Mentor pri doktorskih disertacijah

Mentor pri diplomskih delih

2. Andrej Zupan, Vpliv modifikacije v področju [Beta]-strukture na encimsko delovanje modrasove netoksične fosfolipaze A[sub]2 : diplomsko delo, Ljubljana, [A. Zupan], 2005. [COBISS.SI-ID 19015975]

Mentor - drugo

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